Results 21 - 35 of 35 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29520 | 5' | -56.3 | NC_006151.1 | + | 6923 | 0.68 | 0.769471 |
Target: 5'- cUAC-UUUGCAUguccGGCCCCGagggcgccaucuuggCCCCUCGa -3' miRNA: 3'- -AUGuAAACGUA----UCGGGGCg--------------GGGGAGU- -5' |
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29520 | 5' | -56.3 | NC_006151.1 | + | 90603 | 0.68 | 0.758813 |
Target: 5'- -cCGUagGCGUGGCCCCcuuCCCCCg-- -3' miRNA: 3'- auGUAaaCGUAUCGGGGc--GGGGGagu -5' |
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29520 | 5' | -56.3 | NC_006151.1 | + | 42201 | 0.68 | 0.729066 |
Target: 5'- aUGCAaaUUuaUGCAaauUAGCCCC-CCCCCUUu -3' miRNA: 3'- -AUGU--AA--ACGU---AUCGGGGcGGGGGAGu -5' |
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29520 | 5' | -56.3 | NC_006151.1 | + | 122788 | 0.68 | 0.718962 |
Target: 5'- gGCGgcUGCGcGGCCUCGCCCgacgagcgCCUCGa -3' miRNA: 3'- aUGUaaACGUaUCGGGGCGGG--------GGAGU- -5' |
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29520 | 5' | -56.3 | NC_006151.1 | + | 34100 | 0.69 | 0.698531 |
Target: 5'- -cCAUUUug--GGCCCCGCCCCUUUg -3' miRNA: 3'- auGUAAAcguaUCGGGGCGGGGGAGu -5' |
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29520 | 5' | -56.3 | NC_006151.1 | + | 42234 | 0.69 | 0.688223 |
Target: 5'- ----------aAGCCCCGCCCCCUUu -3' miRNA: 3'- auguaaacguaUCGGGGCGGGGGAGu -5' |
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29520 | 5' | -56.3 | NC_006151.1 | + | 14023 | 0.69 | 0.688223 |
Target: 5'- --aAUggGCccgucGGCCCgGCCCCCUCGa -3' miRNA: 3'- augUAaaCGua---UCGGGgCGGGGGAGU- -5' |
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29520 | 5' | -56.3 | NC_006151.1 | + | 170 | 0.7 | 0.625678 |
Target: 5'- -----cUGCAUAaCCCCaCCCCCUCAu -3' miRNA: 3'- auguaaACGUAUcGGGGcGGGGGAGU- -5' |
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29520 | 5' | -56.3 | NC_006151.1 | + | 7088 | 0.7 | 0.615222 |
Target: 5'- --gAUUUGCAU-GCCCgGCCCgCUCu -3' miRNA: 3'- augUAAACGUAuCGGGgCGGGgGAGu -5' |
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29520 | 5' | -56.3 | NC_006151.1 | + | 7253 | 0.72 | 0.492847 |
Target: 5'- -uCAUUUGCAUGcucGCCCCacgugGCCgCCCUCGg -3' miRNA: 3'- auGUAAACGUAU---CGGGG-----CGG-GGGAGU- -5' |
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29520 | 5' | -56.3 | NC_006151.1 | + | 6840 | 0.76 | 0.311782 |
Target: 5'- -cCAUUUGCAU-GCCCgGCCCCCg-- -3' miRNA: 3'- auGUAAACGUAuCGGGgCGGGGGagu -5' |
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29520 | 5' | -56.3 | NC_006151.1 | + | 142 | 0.77 | 0.276839 |
Target: 5'- aUGCAUUUGCAUAaCCCCuCCCCCUg- -3' miRNA: 3'- -AUGUAAACGUAUcGGGGcGGGGGAgu -5' |
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29520 | 5' | -56.3 | NC_006151.1 | + | 106 | 0.81 | 0.155082 |
Target: 5'- uUGCAUaaaUUaGCAUGGCCCCuCCCCCUCAu -3' miRNA: 3'- -AUGUA---AA-CGUAUCGGGGcGGGGGAGU- -5' |
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29520 | 5' | -56.3 | NC_006151.1 | + | 196 | 1.02 | 0.005861 |
Target: 5'- aUACAUUUGCAUAGCCCCGCCCCUUCAu -3' miRNA: 3'- -AUGUAAACGUAUCGGGGCGGGGGAGU- -5' |
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29520 | 5' | -56.3 | NC_006151.1 | + | 78 | 1.07 | 0.002724 |
Target: 5'- aUACAUUUGCAUAGCCCCGCCCCCUCAu -3' miRNA: 3'- -AUGUAAACGUAUCGGGGCGGGGGAGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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