miRNA display CGI


Results 1 - 20 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29522 5' -57.9 NC_006151.1 + 94302 0.74 0.376006
Target:  5'- -gCCUGGAggccuGGGCGcGCCGCGGggUGCUGc -3'
miRNA:   3'- ugGGAUCU-----UCCGCuCGGCGCU--ACGAC- -5'
29522 5' -57.9 NC_006151.1 + 22323 0.73 0.392629
Target:  5'- cAUCCUGGccgacGGCGGGCCGCuGGUGCa- -3'
miRNA:   3'- -UGGGAUCuu---CCGCUCGGCG-CUACGac -5'
29522 5' -57.9 NC_006151.1 + 36418 0.73 0.401118
Target:  5'- cCCCUGGccGGCGAGCCgGCcugccucGUGCUGg -3'
miRNA:   3'- uGGGAUCuuCCGCUCGG-CGc------UACGAC- -5'
29522 5' -57.9 NC_006151.1 + 28305 0.73 0.409722
Target:  5'- cGCCCgaAGgcGGCGaAGCCGCGcgGCa- -3'
miRNA:   3'- -UGGGa-UCuuCCGC-UCGGCGCuaCGac -5'
29522 5' -57.9 NC_006151.1 + 39458 0.72 0.473008
Target:  5'- gGCCgUGG-AGGCGcGCCGCGcgGCg- -3'
miRNA:   3'- -UGGgAUCuUCCGCuCGGCGCuaCGac -5'
29522 5' -57.9 NC_006151.1 + 105386 0.71 0.491985
Target:  5'- uGCCUcgAGGAGGUGAcgGCCGCGcUGCUc -3'
miRNA:   3'- -UGGGa-UCUUCCGCU--CGGCGCuACGAc -5'
29522 5' -57.9 NC_006151.1 + 81712 0.7 0.540849
Target:  5'- cGCCCUguacgcGGucGcGgGGGCCGUGGUGCUGc -3'
miRNA:   3'- -UGGGA------UCuuC-CgCUCGGCGCUACGAC- -5'
29522 5' -57.9 NC_006151.1 + 10199 0.7 0.581071
Target:  5'- gGCCUgucgcuGAAGGCGAGCCG-GcgGCg- -3'
miRNA:   3'- -UGGGau----CUUCCGCUCGGCgCuaCGac -5'
29522 5' -57.9 NC_006151.1 + 8914 0.7 0.581071
Target:  5'- cGCCCUGGGAGaGCGGcCCGUGccGCUu -3'
miRNA:   3'- -UGGGAUCUUC-CGCUcGGCGCuaCGAc -5'
29522 5' -57.9 NC_006151.1 + 107276 0.7 0.581071
Target:  5'- aGCCCcgccgGGGcucGGGCGAGaUCGUGGUGCUa -3'
miRNA:   3'- -UGGGa----UCU---UCCGCUC-GGCGCUACGAc -5'
29522 5' -57.9 NC_006151.1 + 123756 0.7 0.588182
Target:  5'- uCCCUcaGGGAGGCGAGggccgagccgaagcCCGCGcgGCg- -3'
miRNA:   3'- uGGGA--UCUUCCGCUC--------------GGCGCuaCGac -5'
29522 5' -57.9 NC_006151.1 + 34359 0.69 0.601427
Target:  5'- gGCCC-AGuGAGGCGAGCCGCcg-GCc- -3'
miRNA:   3'- -UGGGaUC-UUCCGCUCGGCGcuaCGac -5'
29522 5' -57.9 NC_006151.1 + 126362 0.69 0.601427
Target:  5'- cGCCCgucGGGGCGccgggggcuccGGCgGCGGUGCUGc -3'
miRNA:   3'- -UGGGaucUUCCGC-----------UCGgCGCUACGAC- -5'
29522 5' -57.9 NC_006151.1 + 38900 0.69 0.611643
Target:  5'- cGCCCUGGgcGcGCG-GCgCGCGGacgUGCUGc -3'
miRNA:   3'- -UGGGAUCuuC-CGCuCG-GCGCU---ACGAC- -5'
29522 5' -57.9 NC_006151.1 + 123346 0.69 0.632113
Target:  5'- cGCCCcggcgacggggcUGGggGGCGGgcGCCGCGGggGCg- -3'
miRNA:   3'- -UGGG------------AUCuuCCGCU--CGGCGCUa-CGac -5'
29522 5' -57.9 NC_006151.1 + 20432 0.69 0.632113
Target:  5'- cGCCgUGGcguGGGCGgaccugccGGCCGCGgcGCUGc -3'
miRNA:   3'- -UGGgAUCu--UCCGC--------UCGGCGCuaCGAC- -5'
29522 5' -57.9 NC_006151.1 + 8856 0.69 0.642352
Target:  5'- gACCCUGGAgucGGGCcAGCgCGUggcccagcuGGUGCUGa -3'
miRNA:   3'- -UGGGAUCU---UCCGcUCG-GCG---------CUACGAC- -5'
29522 5' -57.9 NC_006151.1 + 16097 0.69 0.642352
Target:  5'- cGCCCUGGgcGGgGA-CCGCGggGgUGg -3'
miRNA:   3'- -UGGGAUCuuCCgCUcGGCGCuaCgAC- -5'
29522 5' -57.9 NC_006151.1 + 30773 0.68 0.662798
Target:  5'- cGCCCUGGcuGGCGGacuaCGCGgcGCUGu -3'
miRNA:   3'- -UGGGAUCuuCCGCUcg--GCGCuaCGAC- -5'
29522 5' -57.9 NC_006151.1 + 9990 0.68 0.672987
Target:  5'- gGCCCgc-GAGGCG-GCCGCGG-GCg- -3'
miRNA:   3'- -UGGGaucUUCCGCuCGGCGCUaCGac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.