miRNA display CGI


Results 81 - 100 of 167 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29523 3' -55.5 NC_006151.1 + 77453 0.67 0.883449
Target:  5'- cGCGG-CGUcgagcGCCUCCGCAAaguccGCCCGc -3'
miRNA:   3'- -CGUCuGUA-----CGGAGGUGUUgcu--CGGGC- -5'
29523 3' -55.5 NC_006151.1 + 75477 0.67 0.876319
Target:  5'- cGCGGcgGCccGCCggcgCCGCGgccACGGGCUCGg -3'
miRNA:   3'- -CGUC--UGuaCGGa---GGUGU---UGCUCGGGC- -5'
29523 3' -55.5 NC_006151.1 + 30488 0.67 0.876319
Target:  5'- gGCGGACGcGCgCgcgCCGC--CGAGCCUGg -3'
miRNA:   3'- -CGUCUGUaCG-Ga--GGUGuuGCUCGGGC- -5'
29523 3' -55.5 NC_006151.1 + 10297 0.67 0.876319
Target:  5'- cGCGGGCGUggGCCUCgGCcACGcGUCCc -3'
miRNA:   3'- -CGUCUGUA--CGGAGgUGuUGCuCGGGc -5'
29523 3' -55.5 NC_006151.1 + 83305 0.67 0.883449
Target:  5'- aCAGGCGcGCCggCCAgccCGAGCCCa -3'
miRNA:   3'- cGUCUGUaCGGa-GGUguuGCUCGGGc -5'
29523 3' -55.5 NC_006151.1 + 14931 0.67 0.883449
Target:  5'- -------aGCCcgaggCCACGGCGGGCCCGc -3'
miRNA:   3'- cgucuguaCGGa----GGUGUUGCUCGGGC- -5'
29523 3' -55.5 NC_006151.1 + 106769 0.67 0.883449
Target:  5'- aGCAccGCGaGCC-CCugcuCGACGAGCCCGc -3'
miRNA:   3'- -CGUc-UGUaCGGaGGu---GUUGCUCGGGC- -5'
29523 3' -55.5 NC_006151.1 + 62456 0.67 0.883449
Target:  5'- -aGGACG-GUCUCCAgGAuCGuGCCCGc -3'
miRNA:   3'- cgUCUGUaCGGAGGUgUU-GCuCGGGC- -5'
29523 3' -55.5 NC_006151.1 + 56657 0.67 0.883449
Target:  5'- aGCGGg---GCCUCCcCGGCGcccGGCCCa -3'
miRNA:   3'- -CGUCuguaCGGAGGuGUUGC---UCGGGc -5'
29523 3' -55.5 NC_006151.1 + 89039 0.67 0.883449
Target:  5'- cGCuGGCGcggcGCUUCgGCGACGAggcGCCCGc -3'
miRNA:   3'- -CGuCUGUa---CGGAGgUGUUGCU---CGGGC- -5'
29523 3' -55.5 NC_006151.1 + 17571 0.68 0.837466
Target:  5'- cGCcGACAcggGCCUCCuggacuACAGCGAGaUCCa -3'
miRNA:   3'- -CGuCUGUa--CGGAGG------UGUUGCUC-GGGc -5'
29523 3' -55.5 NC_006151.1 + 87971 0.68 0.837466
Target:  5'- cGCGGACG-GCCagCCGCcGCGGGaCCuCGg -3'
miRNA:   3'- -CGUCUGUaCGGa-GGUGuUGCUC-GG-GC- -5'
29523 3' -55.5 NC_006151.1 + 21016 0.68 0.837466
Target:  5'- gGCGGAgGcgGCgUCCACGgcggcgGCGGGCgCCGa -3'
miRNA:   3'- -CGUCUgUa-CGgAGGUGU------UGCUCG-GGC- -5'
29523 3' -55.5 NC_006151.1 + 42266 0.68 0.84321
Target:  5'- cGUGGACgcGUGCCUgCGCGagggccaggcguggACGGGgCCCGg -3'
miRNA:   3'- -CGUCUG--UACGGAgGUGU--------------UGCUC-GGGC- -5'
29523 3' -55.5 NC_006151.1 + 65522 0.68 0.845643
Target:  5'- gGCGGGCGcgcgGCCcCCACGcugaGCGugcGCCCGc -3'
miRNA:   3'- -CGUCUGUa---CGGaGGUGU----UGCu--CGGGC- -5'
29523 3' -55.5 NC_006151.1 + 29142 0.68 0.845643
Target:  5'- uGCGcGACGgggGCCUgCGCGACGuGCgCGu -3'
miRNA:   3'- -CGU-CUGUa--CGGAgGUGUUGCuCGgGC- -5'
29523 3' -55.5 NC_006151.1 + 64767 0.68 0.845643
Target:  5'- cGCcGGCcgggGCCUcgucgCCGCGACGGcGCCCGu -3'
miRNA:   3'- -CGuCUGua--CGGA-----GGUGUUGCU-CGGGC- -5'
29523 3' -55.5 NC_006151.1 + 27334 0.68 0.845643
Target:  5'- uCGGGCA-GCaCgaagCCGC-GCGAGCCCGc -3'
miRNA:   3'- cGUCUGUaCG-Ga---GGUGuUGCUCGGGC- -5'
29523 3' -55.5 NC_006151.1 + 119474 0.68 0.845643
Target:  5'- --cGACgGUGCggaCCACGAgGAGCCCGa -3'
miRNA:   3'- cguCUG-UACGga-GGUGUUgCUCGGGC- -5'
29523 3' -55.5 NC_006151.1 + 26459 0.68 0.8291
Target:  5'- cGCAGcacCAcGCgCUCCcCcGCGGGCCCGg -3'
miRNA:   3'- -CGUCu--GUaCG-GAGGuGuUGCUCGGGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.