miRNA display CGI


Results 121 - 140 of 167 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29523 3' -55.5 NC_006151.1 + 55336 0.69 0.756338
Target:  5'- aGCGGGCggGCgCUCCGCAcguUGAGCaggCCGg -3'
miRNA:   3'- -CGUCUGuaCG-GAGGUGUu--GCUCG---GGC- -5'
29523 3' -55.5 NC_006151.1 + 55090 0.69 0.781925
Target:  5'- cGCAGGCucggcgcgagcGCgUCCGCGGCGuccgcggccgcgaGGCCCGg -3'
miRNA:   3'- -CGUCUGua---------CGgAGGUGUUGC-------------UCGGGC- -5'
29523 3' -55.5 NC_006151.1 + 92289 0.69 0.78471
Target:  5'- uGguGACGUGCagggcccgCUCCACGACGAgggugGCCa- -3'
miRNA:   3'- -CguCUGUACG--------GAGGUGUUGCU-----CGGgc -5'
29523 3' -55.5 NC_006151.1 + 82504 0.69 0.78471
Target:  5'- cGUGGACAUGaCCUCgucgACGACGAGCaCGu -3'
miRNA:   3'- -CGUCUGUAC-GGAGg---UGUUGCUCGgGC- -5'
29523 3' -55.5 NC_006151.1 + 20947 0.69 0.806519
Target:  5'- cGCGGAC--GCgCUCCugGACGcgcacgacguguuccGGCCCGc -3'
miRNA:   3'- -CGUCUGuaCG-GAGGugUUGC---------------UCGGGC- -5'
29523 3' -55.5 NC_006151.1 + 89493 0.69 0.802945
Target:  5'- aGCGGcgGCGgcGCCUCCGCGggcgucgcgGCGAGCUCc -3'
miRNA:   3'- -CGUC--UGUa-CGGAGGUGU---------UGCUCGGGc -5'
29523 3' -55.5 NC_006151.1 + 121915 0.69 0.802945
Target:  5'- -gGGGCcgggGCCUgggCCuCGGCGAGCCCGc -3'
miRNA:   3'- cgUCUGua--CGGA---GGuGUUGCUCGGGC- -5'
29523 3' -55.5 NC_006151.1 + 78996 0.69 0.793901
Target:  5'- gGCGGcGCGcGCCgCCGCGGCGGggacGCCCGc -3'
miRNA:   3'- -CGUC-UGUaCGGaGGUGUUGCU----CGGGC- -5'
29523 3' -55.5 NC_006151.1 + 7543 0.69 0.793901
Target:  5'- gGCGGuCGUGCgCgcgcucugCCGCGGgGAGCCCc -3'
miRNA:   3'- -CGUCuGUACG-Ga-------GGUGUUgCUCGGGc -5'
29523 3' -55.5 NC_006151.1 + 22174 0.69 0.793901
Target:  5'- aCGGGCGcgugGCCgaCCGCGACGGGCgCUGg -3'
miRNA:   3'- cGUCUGUa---CGGa-GGUGUUGCUCG-GGC- -5'
29523 3' -55.5 NC_006151.1 + 138397 0.69 0.790242
Target:  5'- gGCGGAgGagGCCgagggccgcggggCCGCGGCGGGCgCCGg -3'
miRNA:   3'- -CGUCUgUa-CGGa------------GGUGUUGCUCG-GGC- -5'
29523 3' -55.5 NC_006151.1 + 80136 0.69 0.78471
Target:  5'- cGguGACGcgaaagGCCUCCuCGGCGcgcGCCCGc -3'
miRNA:   3'- -CguCUGUa-----CGGAGGuGUUGCu--CGGGC- -5'
29523 3' -55.5 NC_006151.1 + 141794 0.69 0.78471
Target:  5'- -gGGACGauCCUCCGCcgcCGAGCCCu -3'
miRNA:   3'- cgUCUGUacGGAGGUGuu-GCUCGGGc -5'
29523 3' -55.5 NC_006151.1 + 84490 0.7 0.706953
Target:  5'- cGCGGcCAcGCCUCCGCGggcACGAGCgaGa -3'
miRNA:   3'- -CGUCuGUaCGGAGGUGU---UGCUCGggC- -5'
29523 3' -55.5 NC_006151.1 + 24411 0.7 0.706953
Target:  5'- gGCGGcgccGCGgccGCCUCCGCGgGCGcGCCCGu -3'
miRNA:   3'- -CGUC----UGUa--CGGAGGUGU-UGCuCGGGC- -5'
29523 3' -55.5 NC_006151.1 + 78358 0.7 0.716996
Target:  5'- cGCGcGCAUGCC-CCAgGAgGAcGCCCGu -3'
miRNA:   3'- -CGUcUGUACGGaGGUgUUgCU-CGGGC- -5'
29523 3' -55.5 NC_006151.1 + 32499 0.7 0.716996
Target:  5'- gGCGGGCGU-CCUCCACGaucGCGuGCgCCu -3'
miRNA:   3'- -CGUCUGUAcGGAGGUGU---UGCuCG-GGc -5'
29523 3' -55.5 NC_006151.1 + 86229 0.7 0.736852
Target:  5'- cGCAGGCGgcgcgcgcgGCCUCgGCGuccGCGcGGCCCu -3'
miRNA:   3'- -CGUCUGUa--------CGGAGgUGU---UGC-UCGGGc -5'
29523 3' -55.5 NC_006151.1 + 80040 0.7 0.746646
Target:  5'- cGCAGGCGggcgGCacgUCgCACAGCGAGgCCa -3'
miRNA:   3'- -CGUCUGUa---CGg--AG-GUGUUGCUCgGGc -5'
29523 3' -55.5 NC_006151.1 + 92837 0.7 0.706953
Target:  5'- gGCAGcguGCAcGCCUCgGCGACG-GCCgCGg -3'
miRNA:   3'- -CGUC---UGUaCGGAGgUGUUGCuCGG-GC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.