miRNA display CGI


Results 141 - 160 of 167 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29523 3' -55.5 NC_006151.1 + 80040 0.7 0.746646
Target:  5'- cGCAGGCGggcgGCacgUCgCACAGCGAGgCCa -3'
miRNA:   3'- -CGUCUGUa---CGg--AG-GUGUUGCUCgGGc -5'
29523 3' -55.5 NC_006151.1 + 108262 0.7 0.746646
Target:  5'- cGCGGGagacGCCUCCGCG-CGcccauuGGCCCGg -3'
miRNA:   3'- -CGUCUgua-CGGAGGUGUuGC------UCGGGC- -5'
29523 3' -55.5 NC_006151.1 + 82927 0.71 0.644637
Target:  5'- cGCAGACGuUGuCCcCCGCGGCGAggcgcgcGCCCa -3'
miRNA:   3'- -CGUCUGU-AC-GGaGGUGUUGCU-------CGGGc -5'
29523 3' -55.5 NC_006151.1 + 103963 0.71 0.645667
Target:  5'- cGCGGcCGUGCuggacucuagCUCCAUcgUGGGCCCGg -3'
miRNA:   3'- -CGUCuGUACG----------GAGGUGuuGCUCGGGC- -5'
29523 3' -55.5 NC_006151.1 + 103022 0.71 0.655959
Target:  5'- gGCGGcGCuUGCCUCCcCGGCGccugccuccccGGCCCGg -3'
miRNA:   3'- -CGUC-UGuACGGAGGuGUUGC-----------UCGGGC- -5'
29523 3' -55.5 NC_006151.1 + 65346 0.71 0.655959
Target:  5'- gGCGGAC--GCCaUCCuGCGGCGGGCCgCGg -3'
miRNA:   3'- -CGUCUGuaCGG-AGG-UGUUGCUCGG-GC- -5'
29523 3' -55.5 NC_006151.1 + 26241 0.71 0.666232
Target:  5'- cGCGGcgucgacgacGCGcGCgUCCACGucgGCGGGCCCGa -3'
miRNA:   3'- -CGUC----------UGUaCGgAGGUGU---UGCUCGGGC- -5'
29523 3' -55.5 NC_006151.1 + 20420 0.71 0.675453
Target:  5'- gGCGGACcUGCCggCCGCGGCgcugcgcgacgccGAGCgCCGg -3'
miRNA:   3'- -CGUCUGuACGGa-GGUGUUG-------------CUCG-GGC- -5'
29523 3' -55.5 NC_006151.1 + 46187 0.71 0.676476
Target:  5'- aCGGGCAgcGCCUCgGCGGCGGGCgUGu -3'
miRNA:   3'- cGUCUGUa-CGGAGgUGUUGCUCGgGC- -5'
29523 3' -55.5 NC_006151.1 + 118642 0.72 0.583969
Target:  5'- aGCAG-CAUGcCCUCCAuCAGCGucgagggcuucuGGCCCa -3'
miRNA:   3'- -CGUCuGUAC-GGAGGU-GUUGC------------UCGGGc -5'
29523 3' -55.5 NC_006151.1 + 42531 0.72 0.583969
Target:  5'- cGCGGGCGUGCC-CCugcucgcgcaaACGugGGuGCCCGu -3'
miRNA:   3'- -CGUCUGUACGGaGG-----------UGUugCU-CGGGC- -5'
29523 3' -55.5 NC_006151.1 + 59899 0.72 0.594207
Target:  5'- uCGGGCggGcCCUCgACcGCGGGCCCGa -3'
miRNA:   3'- cGUCUGuaC-GGAGgUGuUGCUCGGGC- -5'
29523 3' -55.5 NC_006151.1 + 47526 0.72 0.614759
Target:  5'- -aGGGCGUGCgguugaagCUCUGCAGCGAgaGCCCGa -3'
miRNA:   3'- cgUCUGUACG--------GAGGUGUUGCU--CGGGC- -5'
29523 3' -55.5 NC_006151.1 + 140757 0.73 0.53344
Target:  5'- uGCAGGCGggcgaaggagGCCUCCACGcgggcgaagcagGcCGGGCCCa -3'
miRNA:   3'- -CGUCUGUa---------CGGAGGUGU------------U-GCUCGGGc -5'
29523 3' -55.5 NC_006151.1 + 43174 0.73 0.53344
Target:  5'- cGCGGGCGcacgGCCUCCGuCuuCGcGCCCGg -3'
miRNA:   3'- -CGUCUGUa---CGGAGGU-GuuGCuCGGGC- -5'
29523 3' -55.5 NC_006151.1 + 29939 0.73 0.550471
Target:  5'- gGCGGACGcgcGCUUCCugGcgcugaugcgcgccGCGGGCCCGc -3'
miRNA:   3'- -CGUCUGUa--CGGAGGugU--------------UGCUCGGGC- -5'
29523 3' -55.5 NC_006151.1 + 141259 0.73 0.553494
Target:  5'- cGCGGGCcgguggGUCUCCACGGCGccCCCGg -3'
miRNA:   3'- -CGUCUGua----CGGAGGUGUUGCucGGGC- -5'
29523 3' -55.5 NC_006151.1 + 122898 0.73 0.553494
Target:  5'- cGCAGGCugucGUGCCacgaUCCgACGACGGGCCgGc -3'
miRNA:   3'- -CGUCUG----UACGG----AGG-UGUUGCUCGGgC- -5'
29523 3' -55.5 NC_006151.1 + 85579 0.73 0.553494
Target:  5'- gGCAGACGUcgcagcgcaggcGCaggCCGCAgcucACGGGCCCGa -3'
miRNA:   3'- -CGUCUGUA------------CGga-GGUGU----UGCUCGGGC- -5'
29523 3' -55.5 NC_006151.1 + 120417 0.74 0.50387
Target:  5'- aGCGGGCGg----CCGCGGCGAGCCCa -3'
miRNA:   3'- -CGUCUGUacggaGGUGUUGCUCGGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.