Results 161 - 167 of 167 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio #
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P value |
| Predicted miRNA align pattern | |||||||
| 29523 | 3' | -55.5 | NC_006151.1 | + | 73890 | 0.75 | 0.437916 |
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Target: 5'- cGCAccGgGUGCCgcgCCGCGACGAGCUCGg -3' miRNA: 3'- -CGUc-UgUACGGa--GGUGUUGCUCGGGC- -5' |
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| 29523 | 3' | -55.5 | NC_006151.1 | + | 141381 | 0.75 | 0.456271 |
|
Target: 5'- -gAGAUG-GCCUCCACcuuGAUGGGCCCGa -3' miRNA: 3'- cgUCUGUaCGGAGGUG---UUGCUCGGGC- -5' |
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| 29523 | 3' | -55.5 | NC_006151.1 | + | 77391 | 0.76 | 0.385515 |
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Target: 5'- cGCGGACGgccgccuggGCUUCCAC-GCGGGCCUGc -3' miRNA: 3'- -CGUCUGUa--------CGGAGGUGuUGCUCGGGC- -5' |
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| 29523 | 3' | -55.5 | NC_006151.1 | + | 142732 | 0.76 | 0.377193 |
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Target: 5'- cGCGGGCGgggGCUUCCGCuccGCGGcGCCCGc -3' miRNA: 3'- -CGUCUGUa--CGGAGGUGu--UGCU-CGGGC- -5' |
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| 29523 | 3' | -55.5 | NC_006151.1 | + | 20366 | 0.77 | 0.360914 |
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Target: 5'- cGCGGACc-GCCUCUcgcggcgcucgGCGGCGAGCCUGg -3' miRNA: 3'- -CGUCUGuaCGGAGG-----------UGUUGCUCGGGC- -5' |
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| 29523 | 3' | -55.5 | NC_006151.1 | + | 88115 | 0.77 | 0.352961 |
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Target: 5'- gGCGGACAacggggGCCUCCGCGagcaggugcGCGAGCgCGa -3' miRNA: 3'- -CGUCUGUa-----CGGAGGUGU---------UGCUCGgGC- -5' |
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| 29523 | 3' | -55.5 | NC_006151.1 | + | 77655 | 0.78 | 0.32314 |
|
Target: 5'- cGCGGACGUGCCgcgguggaugggcggCCGCGccaGCGcGGCCCGg -3' miRNA: 3'- -CGUCUGUACGGa--------------GGUGU---UGC-UCGGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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