miRNA display CGI


Results 121 - 140 of 167 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29523 3' -55.5 NC_006151.1 + 139084 0.67 0.864453
Target:  5'- --cGACGgucGCCUCCccggcgcggggguccGCGGCGcGGCCCGg -3'
miRNA:   3'- cguCUGUa--CGGAGG---------------UGUUGC-UCGGGC- -5'
29523 3' -55.5 NC_006151.1 + 139930 0.67 0.8614
Target:  5'- aGCAGcGCGggaGCggggUCCGgAGCGGGCCCGa -3'
miRNA:   3'- -CGUC-UGUa--CGg---AGGUgUUGCUCGGGC- -5'
29523 3' -55.5 NC_006151.1 + 70687 0.66 0.909671
Target:  5'- gGCGGGUAcGCCUCCugGAaGAGCgCGc -3'
miRNA:   3'- -CGUCUGUaCGGAGGugUUgCUCGgGC- -5'
29523 3' -55.5 NC_006151.1 + 27523 0.66 0.915635
Target:  5'- cGCAGGCccGCCgggCGCG-CGAGCgCGa -3'
miRNA:   3'- -CGUCUGuaCGGag-GUGUuGCUCGgGC- -5'
29523 3' -55.5 NC_006151.1 + 18397 0.66 0.915635
Target:  5'- aGCAcGcACGUGCUggCCgGCGACaGGCCCGa -3'
miRNA:   3'- -CGU-C-UGUACGGa-GG-UGUUGcUCGGGC- -5'
29523 3' -55.5 NC_006151.1 + 14013 0.66 0.915635
Target:  5'- gGCGGggcGCAcgGCCgugggCGgGACGAGCCCGu -3'
miRNA:   3'- -CGUC---UGUa-CGGag---GUgUUGCUCGGGC- -5'
29523 3' -55.5 NC_006151.1 + 7187 0.66 0.915635
Target:  5'- cGCGG-CcgGCCUaCgACcuGCGGGCCCu -3'
miRNA:   3'- -CGUCuGuaCGGA-GgUGu-UGCUCGGGc -5'
29523 3' -55.5 NC_006151.1 + 78500 0.66 0.921358
Target:  5'- uGCGGGCGcagGCCgagcgCCACGuccagcagcACGuGGCCCa -3'
miRNA:   3'- -CGUCUGUa--CGGa----GGUGU---------UGC-UCGGGc -5'
29523 3' -55.5 NC_006151.1 + 75068 0.66 0.921358
Target:  5'- cGCGGcCA--CCUCCAUGGCGcgcGCCCGc -3'
miRNA:   3'- -CGUCuGUacGGAGGUGUUGCu--CGGGC- -5'
29523 3' -55.5 NC_006151.1 + 106004 0.66 0.921358
Target:  5'- cCAGGCcgcgGCCcgcuaccgcgCCGCGGcCGGGCCCGu -3'
miRNA:   3'- cGUCUGua--CGGa---------GGUGUU-GCUCGGGC- -5'
29523 3' -55.5 NC_006151.1 + 135164 0.66 0.909671
Target:  5'- cGCGGGCGccGCgUcCCGCccCGAGCCCc -3'
miRNA:   3'- -CGUCUGUa-CGgA-GGUGuuGCUCGGGc -5'
29523 3' -55.5 NC_006151.1 + 11545 0.66 0.909671
Target:  5'- gGCAG-CAggGCCUCCGCggUGcugccguagcuGGCCaCGg -3'
miRNA:   3'- -CGUCuGUa-CGGAGGUGuuGC-----------UCGG-GC- -5'
29523 3' -55.5 NC_006151.1 + 17895 0.66 0.897027
Target:  5'- uGCAGAacucCAUGCgCgugCC-CGGCGAGCgCGg -3'
miRNA:   3'- -CGUCU----GUACG-Ga--GGuGUUGCUCGgGC- -5'
29523 3' -55.5 NC_006151.1 + 84982 0.66 0.903468
Target:  5'- --cGACGUcgGCgUCCACGugGAugauGCCCGc -3'
miRNA:   3'- cguCUGUA--CGgAGGUGUugCU----CGGGC- -5'
29523 3' -55.5 NC_006151.1 + 58104 0.66 0.903468
Target:  5'- cGCuGGCGcGCCUgCGCGugGucCCCGg -3'
miRNA:   3'- -CGuCUGUaCGGAgGUGUugCucGGGC- -5'
29523 3' -55.5 NC_006151.1 + 3190 0.66 0.903468
Target:  5'- cGC-GACAcGCC-CguCGACGAGCUCGu -3'
miRNA:   3'- -CGuCUGUaCGGaGguGUUGCUCGGGC- -5'
29523 3' -55.5 NC_006151.1 + 46652 0.66 0.903468
Target:  5'- gGCGcGCggGCUUUUAgCGGCGGGCCCGc -3'
miRNA:   3'- -CGUcUGuaCGGAGGU-GUUGCUCGGGC- -5'
29523 3' -55.5 NC_006151.1 + 140615 0.66 0.909671
Target:  5'- cGUAGACGUGguaguCCcCCACGGCcGGGCCg- -3'
miRNA:   3'- -CGUCUGUAC-----GGaGGUGUUG-CUCGGgc -5'
29523 3' -55.5 NC_006151.1 + 125295 0.66 0.909671
Target:  5'- gGCGGGCAUGUCggaaUGCGgGCGGGCCgGu -3'
miRNA:   3'- -CGUCUGUACGGag--GUGU-UGCUCGGgC- -5'
29523 3' -55.5 NC_006151.1 + 103315 0.66 0.909671
Target:  5'- gGCGacGGCcgGCC-CCGCGGCccgcucGGGCCCa -3'
miRNA:   3'- -CGU--CUGuaCGGaGGUGUUG------CUCGGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.