Results 141 - 160 of 167 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
29523 | 3' | -55.5 | NC_006151.1 | + | 135164 | 0.66 | 0.909671 |
Target: 5'- cGCGGGCGccGCgUcCCGCccCGAGCCCc -3' miRNA: 3'- -CGUCUGUa-CGgA-GGUGuuGCUCGGGc -5' |
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29523 | 3' | -55.5 | NC_006151.1 | + | 70687 | 0.66 | 0.909671 |
Target: 5'- gGCGGGUAcGCCUCCugGAaGAGCgCGc -3' miRNA: 3'- -CGUCUGUaCGGAGGugUUgCUCGgGC- -5' |
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29523 | 3' | -55.5 | NC_006151.1 | + | 55885 | 0.66 | 0.909671 |
Target: 5'- gGCGGACGUcuccGCCggcaCCAuCGACGccAGCUCGg -3' miRNA: 3'- -CGUCUGUA----CGGa---GGU-GUUGC--UCGGGC- -5' |
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29523 | 3' | -55.5 | NC_006151.1 | + | 11545 | 0.66 | 0.909671 |
Target: 5'- gGCAG-CAggGCCUCCGCggUGcugccguagcuGGCCaCGg -3' miRNA: 3'- -CGUCuGUa-CGGAGGUGuuGC-----------UCGG-GC- -5' |
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29523 | 3' | -55.5 | NC_006151.1 | + | 103315 | 0.66 | 0.909671 |
Target: 5'- gGCGacGGCcgGCC-CCGCGGCccgcucGGGCCCa -3' miRNA: 3'- -CGU--CUGuaCGGaGGUGUUG------CUCGGGc -5' |
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29523 | 3' | -55.5 | NC_006151.1 | + | 125295 | 0.66 | 0.909671 |
Target: 5'- gGCGGGCAUGUCggaaUGCGgGCGGGCCgGu -3' miRNA: 3'- -CGUCUGUACGGag--GUGU-UGCUCGGgC- -5' |
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29523 | 3' | -55.5 | NC_006151.1 | + | 140615 | 0.66 | 0.909671 |
Target: 5'- cGUAGACGUGguaguCCcCCACGGCcGGGCCg- -3' miRNA: 3'- -CGUCUGUAC-----GGaGGUGUUG-CUCGGgc -5' |
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29523 | 3' | -55.5 | NC_006151.1 | + | 118986 | 0.66 | 0.915635 |
Target: 5'- cGgGGGCGUugGUCUCgAugguccCGGCGAGCCCGu -3' miRNA: 3'- -CgUCUGUA--CGGAGgU------GUUGCUCGGGC- -5' |
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29523 | 3' | -55.5 | NC_006151.1 | + | 5346 | 0.66 | 0.915635 |
Target: 5'- gGCGGACAUGCUg-CGCGGCcuGGCCg- -3' miRNA: 3'- -CGUCUGUACGGagGUGUUGc-UCGGgc -5' |
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29523 | 3' | -55.5 | NC_006151.1 | + | 7187 | 0.66 | 0.915635 |
Target: 5'- cGCGG-CcgGCCUaCgACcuGCGGGCCCu -3' miRNA: 3'- -CGUCuGuaCGGA-GgUGu-UGCUCGGGc -5' |
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29523 | 3' | -55.5 | NC_006151.1 | + | 14013 | 0.66 | 0.915635 |
Target: 5'- gGCGGggcGCAcgGCCgugggCGgGACGAGCCCGu -3' miRNA: 3'- -CGUC---UGUa-CGGag---GUgUUGCUCGGGC- -5' |
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29523 | 3' | -55.5 | NC_006151.1 | + | 18397 | 0.66 | 0.915635 |
Target: 5'- aGCAcGcACGUGCUggCCgGCGACaGGCCCGa -3' miRNA: 3'- -CGU-C-UGUACGGa-GG-UGUUGcUCGGGC- -5' |
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29523 | 3' | -55.5 | NC_006151.1 | + | 27523 | 0.66 | 0.915635 |
Target: 5'- cGCAGGCccGCCgggCGCG-CGAGCgCGa -3' miRNA: 3'- -CGUCUGuaCGGag-GUGUuGCUCGgGC- -5' |
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29523 | 3' | -55.5 | NC_006151.1 | + | 38550 | 0.66 | 0.915635 |
Target: 5'- gGCGGcgGCGcGCgaCCGCGACGgGGCCCu -3' miRNA: 3'- -CGUC--UGUaCGgaGGUGUUGC-UCGGGc -5' |
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29523 | 3' | -55.5 | NC_006151.1 | + | 39199 | 0.66 | 0.915635 |
Target: 5'- -gAGAac-GCCggcgCgGCGGCGGGCCCGc -3' miRNA: 3'- cgUCUguaCGGa---GgUGUUGCUCGGGC- -5' |
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29523 | 3' | -55.5 | NC_006151.1 | + | 126006 | 0.66 | 0.915635 |
Target: 5'- cGCAGcaccACGUGUUgCCGCGGCGuGUCCu -3' miRNA: 3'- -CGUC----UGUACGGaGGUGUUGCuCGGGc -5' |
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29523 | 3' | -55.5 | NC_006151.1 | + | 20678 | 0.66 | 0.915635 |
Target: 5'- cGUGGGCGgcugcgcgGCCUCgCcCGACGAGCgCCu -3' miRNA: 3'- -CGUCUGUa-------CGGAG-GuGUUGCUCG-GGc -5' |
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29523 | 3' | -55.5 | NC_006151.1 | + | 138772 | 0.66 | 0.915635 |
Target: 5'- -aGGACAUgGCCUCgC-CGGCG-GCCCc -3' miRNA: 3'- cgUCUGUA-CGGAG-GuGUUGCuCGGGc -5' |
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29523 | 3' | -55.5 | NC_006151.1 | + | 51986 | 0.66 | 0.917953 |
Target: 5'- cGUAGACcUGCUcgCCGCGcACGcuggcgugcaccagcAGCCCGg -3' miRNA: 3'- -CGUCUGuACGGa-GGUGU-UGC---------------UCGGGC- -5' |
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29523 | 3' | -55.5 | NC_006151.1 | + | 87570 | 0.66 | 0.917953 |
Target: 5'- gGCGGACGUgcGCCgggcgaccgagcggcUCCGCgAugGAGgCCGu -3' miRNA: 3'- -CGUCUGUA--CGG---------------AGGUG-UugCUCgGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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