Results 161 - 167 of 167 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
29523 | 3' | -55.5 | NC_006151.1 | + | 39153 | 0.66 | 0.921358 |
Target: 5'- gGCuGACGUGgCUCgACGacuacgccgucGCGGcGCCCGu -3' miRNA: 3'- -CGuCUGUACgGAGgUGU-----------UGCU-CGGGC- -5' |
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29523 | 3' | -55.5 | NC_006151.1 | + | 106004 | 0.66 | 0.921358 |
Target: 5'- cCAGGCcgcgGCCcgcuaccgcgCCGCGGcCGGGCCCGu -3' miRNA: 3'- cGUCUGua--CGGa---------GGUGUU-GCUCGGGC- -5' |
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29523 | 3' | -55.5 | NC_006151.1 | + | 18257 | 0.66 | 0.921358 |
Target: 5'- cGUGGGCcccgcgGCCcCCGCGGCcgcccgucGGGCCCGg -3' miRNA: 3'- -CGUCUGua----CGGaGGUGUUG--------CUCGGGC- -5' |
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29523 | 3' | -55.5 | NC_006151.1 | + | 46310 | 0.66 | 0.921358 |
Target: 5'- gGCAGGuccaCCgagCCGCAGCGcucGGCCCGg -3' miRNA: 3'- -CGUCUguacGGa--GGUGUUGC---UCGGGC- -5' |
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29523 | 3' | -55.5 | NC_006151.1 | + | 75068 | 0.66 | 0.921358 |
Target: 5'- cGCGGcCA--CCUCCAUGGCGcgcGCCCGc -3' miRNA: 3'- -CGUCuGUacGGAGGUGUUGCu--CGGGC- -5' |
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29523 | 3' | -55.5 | NC_006151.1 | + | 78500 | 0.66 | 0.921358 |
Target: 5'- uGCGGGCGcagGCCgagcgCCACGuccagcagcACGuGGCCCa -3' miRNA: 3'- -CGUCUGUa--CGGa----GGUGU---------UGC-UCGGGc -5' |
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29523 | 3' | -55.5 | NC_006151.1 | + | 30874 | 0.66 | 0.921358 |
Target: 5'- cGCGGGCuucguggagGCCgccgcggcgCCGCuggcgcugGACGAGCCCu -3' miRNA: 3'- -CGUCUGua-------CGGa--------GGUG--------UUGCUCGGGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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