Results 101 - 120 of 167 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
29523 | 3' | -55.5 | NC_006151.1 | + | 9637 | 0.68 | 0.8291 |
Target: 5'- gGguGGCGUaacCCagggCCACGACGAGCaCCGc -3' miRNA: 3'- -CguCUGUAc--GGa---GGUGUUGCUCG-GGC- -5' |
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29523 | 3' | -55.5 | NC_006151.1 | + | 111492 | 0.68 | 0.8291 |
Target: 5'- cGCgGGACGUGCCcgCCGCcuGgGAGCCgGc -3' miRNA: 3'- -CG-UCUGUACGGa-GGUGu-UgCUCGGgC- -5' |
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29523 | 3' | -55.5 | NC_006151.1 | + | 57380 | 0.68 | 0.8291 |
Target: 5'- cGCGcGCGcGCCgccgCCGcCAugGGGCCCGu -3' miRNA: 3'- -CGUcUGUaCGGa---GGU-GUugCUCGGGC- -5' |
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29523 | 3' | -55.5 | NC_006151.1 | + | 41882 | 0.68 | 0.8291 |
Target: 5'- cGCGGGCuacGCCgCCA--GCGAGCuCCGg -3' miRNA: 3'- -CGUCUGua-CGGaGGUguUGCUCG-GGC- -5' |
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29523 | 3' | -55.5 | NC_006151.1 | + | 26459 | 0.68 | 0.8291 |
Target: 5'- cGCAGcacCAcGCgCUCCcCcGCGGGCCCGg -3' miRNA: 3'- -CGUCu--GUaCG-GAGGuGuUGCUCGGGC- -5' |
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29523 | 3' | -55.5 | NC_006151.1 | + | 71883 | 0.68 | 0.820553 |
Target: 5'- gGCGGGCAU-CCUCC---GCGGGCgCCGc -3' miRNA: 3'- -CGUCUGUAcGGAGGuguUGCUCG-GGC- -5' |
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29523 | 3' | -55.5 | NC_006151.1 | + | 83958 | 0.68 | 0.820553 |
Target: 5'- --cGGCG-GCCUCCGCGACGcGCgCGc -3' miRNA: 3'- cguCUGUaCGGAGGUGUUGCuCGgGC- -5' |
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29523 | 3' | -55.5 | NC_006151.1 | + | 44091 | 0.68 | 0.811831 |
Target: 5'- gGCGGcgucguGCAccGCCUCCucgACGacuACGGGCCCGg -3' miRNA: 3'- -CGUC------UGUa-CGGAGG---UGU---UGCUCGGGC- -5' |
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29523 | 3' | -55.5 | NC_006151.1 | + | 10904 | 0.68 | 0.811831 |
Target: 5'- cGCGGGCAgcuccuCCUCCACGGcCGGGaCUCGc -3' miRNA: 3'- -CGUCUGUac----GGAGGUGUU-GCUC-GGGC- -5' |
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29523 | 3' | -55.5 | NC_006151.1 | + | 105639 | 0.68 | 0.811831 |
Target: 5'- uGCAGA---GCCUCCGC--CGGGCCUa -3' miRNA: 3'- -CGUCUguaCGGAGGUGuuGCUCGGGc -5' |
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29523 | 3' | -55.5 | NC_006151.1 | + | 92765 | 0.68 | 0.811831 |
Target: 5'- gGCAG-CGUccacGCCUCgGCGACGGccGCCCc -3' miRNA: 3'- -CGUCuGUA----CGGAGgUGUUGCU--CGGGc -5' |
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29523 | 3' | -55.5 | NC_006151.1 | + | 84169 | 0.68 | 0.811831 |
Target: 5'- aGCGcGGCGUGgCgcCCGCGgcucaGCGGGCCCGc -3' miRNA: 3'- -CGU-CUGUACgGa-GGUGU-----UGCUCGGGC- -5' |
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29523 | 3' | -55.5 | NC_006151.1 | + | 20947 | 0.69 | 0.806519 |
Target: 5'- cGCGGAC--GCgCUCCugGACGcgcacgacguguuccGGCCCGc -3' miRNA: 3'- -CGUCUGuaCG-GAGGugUUGC---------------UCGGGC- -5' |
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29523 | 3' | -55.5 | NC_006151.1 | + | 89493 | 0.69 | 0.802945 |
Target: 5'- aGCGGcgGCGgcGCCUCCGCGggcgucgcgGCGAGCUCc -3' miRNA: 3'- -CGUC--UGUa-CGGAGGUGU---------UGCUCGGGc -5' |
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29523 | 3' | -55.5 | NC_006151.1 | + | 121915 | 0.69 | 0.802945 |
Target: 5'- -gGGGCcgggGCCUgggCCuCGGCGAGCCCGc -3' miRNA: 3'- cgUCUGua--CGGA---GGuGUUGCUCGGGC- -5' |
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29523 | 3' | -55.5 | NC_006151.1 | + | 22174 | 0.69 | 0.793901 |
Target: 5'- aCGGGCGcgugGCCgaCCGCGACGGGCgCUGg -3' miRNA: 3'- cGUCUGUa---CGGa-GGUGUUGCUCG-GGC- -5' |
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29523 | 3' | -55.5 | NC_006151.1 | + | 7543 | 0.69 | 0.793901 |
Target: 5'- gGCGGuCGUGCgCgcgcucugCCGCGGgGAGCCCc -3' miRNA: 3'- -CGUCuGUACG-Ga-------GGUGUUgCUCGGGc -5' |
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29523 | 3' | -55.5 | NC_006151.1 | + | 78996 | 0.69 | 0.793901 |
Target: 5'- gGCGGcGCGcGCCgCCGCGGCGGggacGCCCGc -3' miRNA: 3'- -CGUC-UGUaCGGaGGUGUUGCU----CGGGC- -5' |
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29523 | 3' | -55.5 | NC_006151.1 | + | 138397 | 0.69 | 0.790242 |
Target: 5'- gGCGGAgGagGCCgagggccgcggggCCGCGGCGGGCgCCGg -3' miRNA: 3'- -CGUCUgUa-CGGa------------GGUGUUGCUCG-GGC- -5' |
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29523 | 3' | -55.5 | NC_006151.1 | + | 141794 | 0.69 | 0.78471 |
Target: 5'- -gGGACGauCCUCCGCcgcCGAGCCCu -3' miRNA: 3'- cgUCUGUacGGAGGUGuu-GCUCGGGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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