miRNA display CGI


Results 81 - 100 of 167 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29523 3' -55.5 NC_006151.1 + 62456 0.67 0.883449
Target:  5'- -aGGACG-GUCUCCAgGAuCGuGCCCGc -3'
miRNA:   3'- cgUCUGUaCGGAGGUgUU-GCuCGGGC- -5'
29523 3' -55.5 NC_006151.1 + 64148 0.69 0.775379
Target:  5'- -gGGACggGCCUCCcCGGCGGGacggCCGg -3'
miRNA:   3'- cgUCUGuaCGGAGGuGUUGCUCg---GGC- -5'
29523 3' -55.5 NC_006151.1 + 64767 0.68 0.845643
Target:  5'- cGCcGGCcgggGCCUcgucgCCGCGACGGcGCCCGu -3'
miRNA:   3'- -CGuCUGua--CGGA-----GGUGUUGCU-CGGGC- -5'
29523 3' -55.5 NC_006151.1 + 65346 0.71 0.655959
Target:  5'- gGCGGAC--GCCaUCCuGCGGCGGGCCgCGg -3'
miRNA:   3'- -CGUCUGuaCGG-AGG-UGUUGCUCGG-GC- -5'
29523 3' -55.5 NC_006151.1 + 65522 0.68 0.845643
Target:  5'- gGCGGGCGcgcgGCCcCCACGcugaGCGugcGCCCGc -3'
miRNA:   3'- -CGUCUGUa---CGGaGGUGU----UGCu--CGGGC- -5'
29523 3' -55.5 NC_006151.1 + 65742 0.66 0.897027
Target:  5'- aGCAGGaccGCgUCCugGAgcuccuggcCGAGCCCGc -3'
miRNA:   3'- -CGUCUguaCGgAGGugUU---------GCUCGGGC- -5'
29523 3' -55.5 NC_006151.1 + 70687 0.66 0.909671
Target:  5'- gGCGGGUAcGCCUCCugGAaGAGCgCGc -3'
miRNA:   3'- -CGUCUGUaCGGAGGugUUgCUCGgGC- -5'
29523 3' -55.5 NC_006151.1 + 71080 0.69 0.765919
Target:  5'- cGCAGcgucGCGUGCCgCCGCAGCGucUCCa -3'
miRNA:   3'- -CGUC----UGUACGGaGGUGUUGCucGGGc -5'
29523 3' -55.5 NC_006151.1 + 71883 0.68 0.820553
Target:  5'- gGCGGGCAU-CCUCC---GCGGGCgCCGc -3'
miRNA:   3'- -CGUCUGUAcGGAGGuguUGCUCG-GGC- -5'
29523 3' -55.5 NC_006151.1 + 73890 0.75 0.437916
Target:  5'- cGCAccGgGUGCCgcgCCGCGACGAGCUCGg -3'
miRNA:   3'- -CGUc-UgUACGGa--GGUGUUGCUCGGGC- -5'
29523 3' -55.5 NC_006151.1 + 74134 0.67 0.890353
Target:  5'- cGCGGGCGcGUCgCCGCccGCGAGCgCGg -3'
miRNA:   3'- -CGUCUGUaCGGaGGUGu-UGCUCGgGC- -5'
29523 3' -55.5 NC_006151.1 + 75068 0.66 0.921358
Target:  5'- cGCGGcCA--CCUCCAUGGCGcgcGCCCGc -3'
miRNA:   3'- -CGUCuGUacGGAGGUGUUGCu--CGGGC- -5'
29523 3' -55.5 NC_006151.1 + 75410 0.67 0.853623
Target:  5'- gGCGGGCAcgGgCUCgGCGACGGGCagguCGg -3'
miRNA:   3'- -CGUCUGUa-CgGAGgUGUUGCUCGg---GC- -5'
29523 3' -55.5 NC_006151.1 + 75477 0.67 0.876319
Target:  5'- cGCGGcgGCccGCCggcgCCGCGgccACGGGCUCGg -3'
miRNA:   3'- -CGUC--UGuaCGGa---GGUGU---UGCUCGGGC- -5'
29523 3' -55.5 NC_006151.1 + 75890 0.67 0.853623
Target:  5'- cGCGGGCGU-CCagcCCGcCGAUGAGCUCGg -3'
miRNA:   3'- -CGUCUGUAcGGa--GGU-GUUGCUCGGGC- -5'
29523 3' -55.5 NC_006151.1 + 77391 0.76 0.385515
Target:  5'- cGCGGACGgccgccuggGCUUCCAC-GCGGGCCUGc -3'
miRNA:   3'- -CGUCUGUa--------CGGAGGUGuUGCUCGGGC- -5'
29523 3' -55.5 NC_006151.1 + 77453 0.67 0.883449
Target:  5'- cGCGG-CGUcgagcGCCUCCGCAAaguccGCCCGc -3'
miRNA:   3'- -CGUCuGUA-----CGGAGGUGUUgcu--CGGGC- -5'
29523 3' -55.5 NC_006151.1 + 77655 0.78 0.32314
Target:  5'- cGCGGACGUGCCgcgguggaugggcggCCGCGccaGCGcGGCCCGg -3'
miRNA:   3'- -CGUCUGUACGGa--------------GGUGU---UGC-UCGGGC- -5'
29523 3' -55.5 NC_006151.1 + 78358 0.7 0.716996
Target:  5'- cGCGcGCAUGCC-CCAgGAgGAcGCCCGu -3'
miRNA:   3'- -CGUcUGUACGGaGGUgUUgCU-CGGGC- -5'
29523 3' -55.5 NC_006151.1 + 78500 0.66 0.921358
Target:  5'- uGCGGGCGcagGCCgagcgCCACGuccagcagcACGuGGCCCa -3'
miRNA:   3'- -CGUCUGUa--CGGa----GGUGU---------UGC-UCGGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.