miRNA display CGI


Results 121 - 140 of 167 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29523 3' -55.5 NC_006151.1 + 34226 0.66 0.90092
Target:  5'- cGCAGACccagccgccgcgGUCUCCGCuGGCG-GCCCc -3'
miRNA:   3'- -CGUCUGua----------CGGAGGUG-UUGCuCGGGc -5'
29523 3' -55.5 NC_006151.1 + 32499 0.7 0.716996
Target:  5'- gGCGGGCGU-CCUCCACGaucGCGuGCgCCu -3'
miRNA:   3'- -CGUCUGUAcGGAGGUGU---UGCuCG-GGc -5'
29523 3' -55.5 NC_006151.1 + 32183 0.67 0.890353
Target:  5'- cGCGGGCGggggguacgcgGCCUggcCCACGaacgcggcggccGCGuGCCCGg -3'
miRNA:   3'- -CGUCUGUa----------CGGA---GGUGU------------UGCuCGGGC- -5'
29523 3' -55.5 NC_006151.1 + 30874 0.66 0.921358
Target:  5'- cGCGGGCuucguggagGCCgccgcggcgCCGCuggcgcugGACGAGCCCu -3'
miRNA:   3'- -CGUCUGua-------CGGa--------GGUG--------UUGCUCGGGc -5'
29523 3' -55.5 NC_006151.1 + 30488 0.67 0.876319
Target:  5'- gGCGGACGcGCgCgcgCCGC--CGAGCCUGg -3'
miRNA:   3'- -CGUCUGUaCG-Ga--GGUGuuGCUCGGGC- -5'
29523 3' -55.5 NC_006151.1 + 29939 0.73 0.550471
Target:  5'- gGCGGACGcgcGCUUCCugGcgcugaugcgcgccGCGGGCCCGc -3'
miRNA:   3'- -CGUCUGUa--CGGAGGugU--------------UGCUCGGGC- -5'
29523 3' -55.5 NC_006151.1 + 29142 0.68 0.845643
Target:  5'- uGCGcGACGgggGCCUgCGCGACGuGCgCGu -3'
miRNA:   3'- -CGU-CUGUa--CGGAgGUGUUGCuCGgGC- -5'
29523 3' -55.5 NC_006151.1 + 27523 0.66 0.915635
Target:  5'- cGCAGGCccGCCgggCGCG-CGAGCgCGa -3'
miRNA:   3'- -CGUCUGuaCGGag-GUGUuGCUCGgGC- -5'
29523 3' -55.5 NC_006151.1 + 27334 0.68 0.845643
Target:  5'- uCGGGCA-GCaCgaagCCGC-GCGAGCCCGc -3'
miRNA:   3'- cGUCUGUaCG-Ga---GGUGuUGCUCGGGC- -5'
29523 3' -55.5 NC_006151.1 + 26459 0.68 0.8291
Target:  5'- cGCAGcacCAcGCgCUCCcCcGCGGGCCCGg -3'
miRNA:   3'- -CGUCu--GUaCG-GAGGuGuUGCUCGGGC- -5'
29523 3' -55.5 NC_006151.1 + 26241 0.71 0.666232
Target:  5'- cGCGGcgucgacgacGCGcGCgUCCACGucgGCGGGCCCGa -3'
miRNA:   3'- -CGUC----------UGUaCGgAGGUGU---UGCUCGGGC- -5'
29523 3' -55.5 NC_006151.1 + 24909 0.69 0.765919
Target:  5'- cGCGGGCAcgGUgUCCAuCAACGGGCaCGa -3'
miRNA:   3'- -CGUCUGUa-CGgAGGU-GUUGCUCGgGC- -5'
29523 3' -55.5 NC_006151.1 + 24411 0.7 0.706953
Target:  5'- gGCGGcgccGCGgccGCCUCCGCGgGCGcGCCCGu -3'
miRNA:   3'- -CGUC----UGUa--CGGAGGUGU-UGCuCGGGC- -5'
29523 3' -55.5 NC_006151.1 + 23414 0.66 0.897027
Target:  5'- --cGGCGUG-CUCCACGGgcAGCCCGu -3'
miRNA:   3'- cguCUGUACgGAGGUGUUgcUCGGGC- -5'
29523 3' -55.5 NC_006151.1 + 22174 0.69 0.793901
Target:  5'- aCGGGCGcgugGCCgaCCGCGACGGGCgCUGg -3'
miRNA:   3'- cGUCUGUa---CGGa-GGUGUUGCUCG-GGC- -5'
29523 3' -55.5 NC_006151.1 + 21468 0.66 0.897027
Target:  5'- gGCGGcGCGUGCCgcuUCCACGcgcGCGucgcGCUCGa -3'
miRNA:   3'- -CGUC-UGUACGG---AGGUGU---UGCu---CGGGC- -5'
29523 3' -55.5 NC_006151.1 + 21016 0.68 0.837466
Target:  5'- gGCGGAgGcgGCgUCCACGgcggcgGCGGGCgCCGa -3'
miRNA:   3'- -CGUCUgUa-CGgAGGUGU------UGCUCG-GGC- -5'
29523 3' -55.5 NC_006151.1 + 20947 0.69 0.806519
Target:  5'- cGCGGAC--GCgCUCCugGACGcgcacgacguguuccGGCCCGc -3'
miRNA:   3'- -CGUCUGuaCG-GAGGugUUGC---------------UCGGGC- -5'
29523 3' -55.5 NC_006151.1 + 20678 0.66 0.915635
Target:  5'- cGUGGGCGgcugcgcgGCCUCgCcCGACGAGCgCCu -3'
miRNA:   3'- -CGUCUGUa-------CGGAG-GuGUUGCUCG-GGc -5'
29523 3' -55.5 NC_006151.1 + 20495 0.66 0.895711
Target:  5'- cGCGGACGccggcgacggggGCgUCgGCGACGAagacggGCCCGg -3'
miRNA:   3'- -CGUCUGUa-----------CGgAGgUGUUGCU------CGGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.