Results 101 - 120 of 167 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29523 | 3' | -55.5 | NC_006151.1 | + | 15773 | 0.67 | 0.883449 |
Target: 5'- cGUcGGCGgcGCuCUCCuGCGACGAGCUCGu -3' miRNA: 3'- -CGuCUGUa-CG-GAGG-UGUUGCUCGGGC- -5' |
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29523 | 3' | -55.5 | NC_006151.1 | + | 41483 | 0.67 | 0.883449 |
Target: 5'- gGCGGGCG-GCCgucgcgcaaguUCCGCccgcgcacccGCGAGCCCa -3' miRNA: 3'- -CGUCUGUaCGG-----------AGGUGu---------UGCUCGGGc -5' |
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29523 | 3' | -55.5 | NC_006151.1 | + | 77453 | 0.67 | 0.883449 |
Target: 5'- cGCGG-CGUcgagcGCCUCCGCAAaguccGCCCGc -3' miRNA: 3'- -CGUCuGUA-----CGGAGGUGUUgcu--CGGGC- -5' |
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29523 | 3' | -55.5 | NC_006151.1 | + | 89039 | 0.67 | 0.883449 |
Target: 5'- cGCuGGCGcggcGCUUCgGCGACGAggcGCCCGc -3' miRNA: 3'- -CGuCUGUa---CGGAGgUGUUGCU---CGGGC- -5' |
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29523 | 3' | -55.5 | NC_006151.1 | + | 56657 | 0.67 | 0.883449 |
Target: 5'- aGCGGg---GCCUCCcCGGCGcccGGCCCa -3' miRNA: 3'- -CGUCuguaCGGAGGuGUUGC---UCGGGc -5' |
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29523 | 3' | -55.5 | NC_006151.1 | + | 16081 | 0.67 | 0.890353 |
Target: 5'- cGCGGGgGUGgCgggggCCGCGGCcgagucgacggGAGCCCGc -3' miRNA: 3'- -CGUCUgUACgGa----GGUGUUG-----------CUCGGGC- -5' |
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29523 | 3' | -55.5 | NC_006151.1 | + | 20495 | 0.66 | 0.895711 |
Target: 5'- cGCGGACGccggcgacggggGCgUCgGCGACGAagacggGCCCGg -3' miRNA: 3'- -CGUCUGUa-----------CGgAGgUGUUGCU------CGGGC- -5' |
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29523 | 3' | -55.5 | NC_006151.1 | + | 86865 | 0.66 | 0.903468 |
Target: 5'- uGCGGACGcGCCcCgGCGGCGcGCUCa -3' miRNA: 3'- -CGUCUGUaCGGaGgUGUUGCuCGGGc -5' |
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29523 | 3' | -55.5 | NC_006151.1 | + | 10625 | 0.66 | 0.903468 |
Target: 5'- cGCGGGacgGCCaCCACGgGCGgccGGCCCGg -3' miRNA: 3'- -CGUCUguaCGGaGGUGU-UGC---UCGGGC- -5' |
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29523 | 3' | -55.5 | NC_006151.1 | + | 19034 | 0.66 | 0.903468 |
Target: 5'- aGguGACc-GCCUucgaCCGCGACGAGaacCCCGu -3' miRNA: 3'- -CguCUGuaCGGA----GGUGUUGCUC---GGGC- -5' |
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29523 | 3' | -55.5 | NC_006151.1 | + | 117128 | 0.66 | 0.903468 |
Target: 5'- gGCgAGGCccGCCUCacggggcgGCGGCGGGCCgCGu -3' miRNA: 3'- -CG-UCUGuaCGGAGg-------UGUUGCUCGG-GC- -5' |
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29523 | 3' | -55.5 | NC_006151.1 | + | 122715 | 0.66 | 0.902834 |
Target: 5'- aGCAGccgGCGcGCCUCCACcgcggcgGACGcGCgCCGg -3' miRNA: 3'- -CGUC---UGUaCGGAGGUG-------UUGCuCG-GGC- -5' |
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29523 | 3' | -55.5 | NC_006151.1 | + | 34226 | 0.66 | 0.90092 |
Target: 5'- cGCAGACccagccgccgcgGUCUCCGCuGGCG-GCCCc -3' miRNA: 3'- -CGUCUGua----------CGGAGGUG-UUGCuCGGGc -5' |
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29523 | 3' | -55.5 | NC_006151.1 | + | 1172 | 0.66 | 0.897027 |
Target: 5'- cCAGACcgGCCgggaCgAgAGCGAGCgCCGu -3' miRNA: 3'- cGUCUGuaCGGa---GgUgUUGCUCG-GGC- -5' |
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29523 | 3' | -55.5 | NC_006151.1 | + | 19535 | 0.66 | 0.897027 |
Target: 5'- cGCGGGCc-GCCUCgGCcucgcCGAcGCCCGg -3' miRNA: 3'- -CGUCUGuaCGGAGgUGuu---GCU-CGGGC- -5' |
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29523 | 3' | -55.5 | NC_006151.1 | + | 21468 | 0.66 | 0.897027 |
Target: 5'- gGCGGcGCGUGCCgcuUCCACGcgcGCGucgcGCUCGa -3' miRNA: 3'- -CGUC-UGUACGG---AGGUGU---UGCu---CGGGC- -5' |
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29523 | 3' | -55.5 | NC_006151.1 | + | 23414 | 0.66 | 0.897027 |
Target: 5'- --cGGCGUG-CUCCACGGgcAGCCCGu -3' miRNA: 3'- cguCUGUACgGAGGUGUUgcUCGGGC- -5' |
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29523 | 3' | -55.5 | NC_006151.1 | + | 65742 | 0.66 | 0.897027 |
Target: 5'- aGCAGGaccGCgUCCugGAgcuccuggcCGAGCCCGc -3' miRNA: 3'- -CGUCUguaCGgAGGugUU---------GCUCGGGC- -5' |
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29523 | 3' | -55.5 | NC_006151.1 | + | 101889 | 0.66 | 0.897027 |
Target: 5'- gGCAGGCucggcgcgccgAUGCgaUCCGCG--GAGCCCGc -3' miRNA: 3'- -CGUCUG-----------UACGg-AGGUGUugCUCGGGC- -5' |
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29523 | 3' | -55.5 | NC_006151.1 | + | 17895 | 0.66 | 0.897027 |
Target: 5'- uGCAGAacucCAUGCgCgugCC-CGGCGAGCgCGg -3' miRNA: 3'- -CGUCU----GUACG-Ga--GGuGUUGCUCGgGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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