Results 121 - 140 of 167 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29523 | 3' | -55.5 | NC_006151.1 | + | 37333 | 0.67 | 0.876319 |
Target: 5'- cGCGGcCGUGCUggCCACGACGcuCUCGc -3' miRNA: 3'- -CGUCuGUACGGa-GGUGUUGCucGGGC- -5' |
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29523 | 3' | -55.5 | NC_006151.1 | + | 57290 | 0.67 | 0.876319 |
Target: 5'- cGCgAGAuCGUGgCCgCCGCGcugcccccgGCGGGCCCGc -3' miRNA: 3'- -CG-UCU-GUAC-GGaGGUGU---------UGCUCGGGC- -5' |
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29523 | 3' | -55.5 | NC_006151.1 | + | 1783 | 0.67 | 0.889673 |
Target: 5'- -gAGGCAugucUGCCUCCcacggcggcugGCGGCGGacgcgguGCCCGg -3' miRNA: 3'- cgUCUGU----ACGGAGG-----------UGUUGCU-------CGGGC- -5' |
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29523 | 3' | -55.5 | NC_006151.1 | + | 111842 | 0.67 | 0.890353 |
Target: 5'- gGCGGGgAUGCCgcgCCGgcACGAGCgCa -3' miRNA: 3'- -CGUCUgUACGGa--GGUguUGCUCGgGc -5' |
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29523 | 3' | -55.5 | NC_006151.1 | + | 48935 | 0.67 | 0.890353 |
Target: 5'- -gAGGCGUGUaacUUCCcguCGGCGGGCUCGg -3' miRNA: 3'- cgUCUGUACG---GAGGu--GUUGCUCGGGC- -5' |
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29523 | 3' | -55.5 | NC_006151.1 | + | 34226 | 0.66 | 0.90092 |
Target: 5'- cGCAGACccagccgccgcgGUCUCCGCuGGCG-GCCCc -3' miRNA: 3'- -CGUCUGua----------CGGAGGUG-UUGCuCGGGc -5' |
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29523 | 3' | -55.5 | NC_006151.1 | + | 1172 | 0.66 | 0.897027 |
Target: 5'- cCAGACcgGCCgggaCgAgAGCGAGCgCCGu -3' miRNA: 3'- cGUCUGuaCGGa---GgUgUUGCUCG-GGC- -5' |
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29523 | 3' | -55.5 | NC_006151.1 | + | 19535 | 0.66 | 0.897027 |
Target: 5'- cGCGGGCc-GCCUCgGCcucgcCGAcGCCCGg -3' miRNA: 3'- -CGUCUGuaCGGAGgUGuu---GCU-CGGGC- -5' |
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29523 | 3' | -55.5 | NC_006151.1 | + | 21468 | 0.66 | 0.897027 |
Target: 5'- gGCGGcGCGUGCCgcuUCCACGcgcGCGucgcGCUCGa -3' miRNA: 3'- -CGUC-UGUACGG---AGGUGU---UGCu---CGGGC- -5' |
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29523 | 3' | -55.5 | NC_006151.1 | + | 23414 | 0.66 | 0.897027 |
Target: 5'- --cGGCGUG-CUCCACGGgcAGCCCGu -3' miRNA: 3'- cguCUGUACgGAGGUGUUgcUCGGGC- -5' |
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29523 | 3' | -55.5 | NC_006151.1 | + | 65742 | 0.66 | 0.897027 |
Target: 5'- aGCAGGaccGCgUCCugGAgcuccuggcCGAGCCCGc -3' miRNA: 3'- -CGUCUguaCGgAGGugUU---------GCUCGGGC- -5' |
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29523 | 3' | -55.5 | NC_006151.1 | + | 101889 | 0.66 | 0.897027 |
Target: 5'- gGCAGGCucggcgcgccgAUGCgaUCCGCG--GAGCCCGc -3' miRNA: 3'- -CGUCUG-----------UACGg-AGGUGUugCUCGGGC- -5' |
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29523 | 3' | -55.5 | NC_006151.1 | + | 17895 | 0.66 | 0.897027 |
Target: 5'- uGCAGAacucCAUGCgCgugCC-CGGCGAGCgCGg -3' miRNA: 3'- -CGUCU----GUACG-Ga--GGuGUUGCUCGgGC- -5' |
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29523 | 3' | -55.5 | NC_006151.1 | + | 20495 | 0.66 | 0.895711 |
Target: 5'- cGCGGACGccggcgacggggGCgUCgGCGACGAagacggGCCCGg -3' miRNA: 3'- -CGUCUGUa-----------CGgAGgUGUUGCU------CGGGC- -5' |
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29523 | 3' | -55.5 | NC_006151.1 | + | 16081 | 0.67 | 0.890353 |
Target: 5'- cGCGGGgGUGgCgggggCCGCGGCcgagucgacggGAGCCCGc -3' miRNA: 3'- -CGUCUgUACgGa----GGUGUUG-----------CUCGGGC- -5' |
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29523 | 3' | -55.5 | NC_006151.1 | + | 74134 | 0.67 | 0.890353 |
Target: 5'- cGCGGGCGcGUCgCCGCccGCGAGCgCGg -3' miRNA: 3'- -CGUCUGUaCGGaGGUGu-UGCUCGgGC- -5' |
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29523 | 3' | -55.5 | NC_006151.1 | + | 32183 | 0.67 | 0.890353 |
Target: 5'- cGCGGGCGggggguacgcgGCCUggcCCACGaacgcggcggccGCGuGCCCGg -3' miRNA: 3'- -CGUCUGUa----------CGGA---GGUGU------------UGCuCGGGC- -5' |
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29523 | 3' | -55.5 | NC_006151.1 | + | 61160 | 0.67 | 0.890353 |
Target: 5'- gGCAG-CGcGCCUCCGCGuccGCGAGgaCGg -3' miRNA: 3'- -CGUCuGUaCGGAGGUGU---UGCUCggGC- -5' |
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29523 | 3' | -55.5 | NC_006151.1 | + | 111710 | 0.67 | 0.890353 |
Target: 5'- cGgGGACGcGCCUgCgGCGGCGGGCgCGc -3' miRNA: 3'- -CgUCUGUaCGGA-GgUGUUGCUCGgGC- -5' |
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29523 | 3' | -55.5 | NC_006151.1 | + | 139529 | 0.67 | 0.890353 |
Target: 5'- cGgGGGCAgGCCgggCGCGggcuccGCGGGCCCGg -3' miRNA: 3'- -CgUCUGUaCGGag-GUGU------UGCUCGGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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