Results 161 - 167 of 167 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29523 | 3' | -55.5 | NC_006151.1 | + | 56657 | 0.67 | 0.883449 |
Target: 5'- aGCGGg---GCCUCCcCGGCGcccGGCCCa -3' miRNA: 3'- -CGUCuguaCGGAGGuGUUGC---UCGGGc -5' |
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29523 | 3' | -55.5 | NC_006151.1 | + | 89039 | 0.67 | 0.883449 |
Target: 5'- cGCuGGCGcggcGCUUCgGCGACGAggcGCCCGc -3' miRNA: 3'- -CGuCUGUa---CGGAGgUGUUGCU---CGGGC- -5' |
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29523 | 3' | -55.5 | NC_006151.1 | + | 77453 | 0.67 | 0.883449 |
Target: 5'- cGCGG-CGUcgagcGCCUCCGCAAaguccGCCCGc -3' miRNA: 3'- -CGUCuGUA-----CGGAGGUGUUgcu--CGGGC- -5' |
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29523 | 3' | -55.5 | NC_006151.1 | + | 41483 | 0.67 | 0.883449 |
Target: 5'- gGCGGGCG-GCCgucgcgcaaguUCCGCccgcgcacccGCGAGCCCa -3' miRNA: 3'- -CGUCUGUaCGG-----------AGGUGu---------UGCUCGGGc -5' |
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29523 | 3' | -55.5 | NC_006151.1 | + | 15773 | 0.67 | 0.883449 |
Target: 5'- cGUcGGCGgcGCuCUCCuGCGACGAGCUCGu -3' miRNA: 3'- -CGuCUGUa-CG-GAGG-UGUUGCUCGGGC- -5' |
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29523 | 3' | -55.5 | NC_006151.1 | + | 1783 | 0.67 | 0.889673 |
Target: 5'- -gAGGCAugucUGCCUCCcacggcggcugGCGGCGGacgcgguGCCCGg -3' miRNA: 3'- cgUCUGU----ACGGAGG-----------UGUUGCU-------CGGGC- -5' |
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29523 | 3' | -55.5 | NC_006151.1 | + | 101889 | 0.66 | 0.897027 |
Target: 5'- gGCAGGCucggcgcgccgAUGCgaUCCGCG--GAGCCCGc -3' miRNA: 3'- -CGUCUG-----------UACGg-AGGUGUugCUCGGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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