miRNA display CGI


Results 1 - 20 of 167 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29523 3' -55.5 NC_006151.1 + 77655 0.78 0.32314
Target:  5'- cGCGGACGUGCCgcgguggaugggcggCCGCGccaGCGcGGCCCGg -3'
miRNA:   3'- -CGUCUGUACGGa--------------GGUGU---UGC-UCGGGC- -5'
29523 3' -55.5 NC_006151.1 + 88115 0.77 0.352961
Target:  5'- gGCGGACAacggggGCCUCCGCGagcaggugcGCGAGCgCGa -3'
miRNA:   3'- -CGUCUGUa-----CGGAGGUGU---------UGCUCGgGC- -5'
29523 3' -55.5 NC_006151.1 + 20366 0.77 0.360914
Target:  5'- cGCGGACc-GCCUCUcgcggcgcucgGCGGCGAGCCUGg -3'
miRNA:   3'- -CGUCUGuaCGGAGG-----------UGUUGCUCGGGC- -5'
29523 3' -55.5 NC_006151.1 + 142732 0.76 0.377193
Target:  5'- cGCGGGCGgggGCUUCCGCuccGCGGcGCCCGc -3'
miRNA:   3'- -CGUCUGUa--CGGAGGUGu--UGCU-CGGGC- -5'
29523 3' -55.5 NC_006151.1 + 77391 0.76 0.385515
Target:  5'- cGCGGACGgccgccuggGCUUCCAC-GCGGGCCUGc -3'
miRNA:   3'- -CGUCUGUa--------CGGAGGUGuUGCUCGGGC- -5'
29523 3' -55.5 NC_006151.1 + 73890 0.75 0.437916
Target:  5'- cGCAccGgGUGCCgcgCCGCGACGAGCUCGg -3'
miRNA:   3'- -CGUc-UgUACGGa--GGUGUUGCUCGGGC- -5'
29523 3' -55.5 NC_006151.1 + 141381 0.75 0.456271
Target:  5'- -gAGAUG-GCCUCCACcuuGAUGGGCCCGa -3'
miRNA:   3'- cgUCUGUaCGGAGGUG---UUGCUCGGGC- -5'
29523 3' -55.5 NC_006151.1 + 120417 0.74 0.50387
Target:  5'- aGCGGGCGg----CCGCGGCGAGCCCa -3'
miRNA:   3'- -CGUCUGUacggaGGUGUUGCUCGGGc -5'
29523 3' -55.5 NC_006151.1 + 140757 0.73 0.53344
Target:  5'- uGCAGGCGggcgaaggagGCCUCCACGcgggcgaagcagGcCGGGCCCa -3'
miRNA:   3'- -CGUCUGUa---------CGGAGGUGU------------U-GCUCGGGc -5'
29523 3' -55.5 NC_006151.1 + 43174 0.73 0.53344
Target:  5'- cGCGGGCGcacgGCCUCCGuCuuCGcGCCCGg -3'
miRNA:   3'- -CGUCUGUa---CGGAGGU-GuuGCuCGGGC- -5'
29523 3' -55.5 NC_006151.1 + 29939 0.73 0.550471
Target:  5'- gGCGGACGcgcGCUUCCugGcgcugaugcgcgccGCGGGCCCGc -3'
miRNA:   3'- -CGUCUGUa--CGGAGGugU--------------UGCUCGGGC- -5'
29523 3' -55.5 NC_006151.1 + 85579 0.73 0.553494
Target:  5'- gGCAGACGUcgcagcgcaggcGCaggCCGCAgcucACGGGCCCGa -3'
miRNA:   3'- -CGUCUGUA------------CGga-GGUGU----UGCUCGGGC- -5'
29523 3' -55.5 NC_006151.1 + 141259 0.73 0.553494
Target:  5'- cGCGGGCcgguggGUCUCCACGGCGccCCCGg -3'
miRNA:   3'- -CGUCUGua----CGGAGGUGUUGCucGGGC- -5'
29523 3' -55.5 NC_006151.1 + 122898 0.73 0.553494
Target:  5'- cGCAGGCugucGUGCCacgaUCCgACGACGGGCCgGc -3'
miRNA:   3'- -CGUCUG----UACGG----AGG-UGUUGCUCGGgC- -5'
29523 3' -55.5 NC_006151.1 + 42531 0.72 0.583969
Target:  5'- cGCGGGCGUGCC-CCugcucgcgcaaACGugGGuGCCCGu -3'
miRNA:   3'- -CGUCUGUACGGaGG-----------UGUugCU-CGGGC- -5'
29523 3' -55.5 NC_006151.1 + 118642 0.72 0.583969
Target:  5'- aGCAG-CAUGcCCUCCAuCAGCGucgagggcuucuGGCCCa -3'
miRNA:   3'- -CGUCuGUAC-GGAGGU-GUUGC------------UCGGGc -5'
29523 3' -55.5 NC_006151.1 + 59899 0.72 0.594207
Target:  5'- uCGGGCggGcCCUCgACcGCGGGCCCGa -3'
miRNA:   3'- cGUCUGuaC-GGAGgUGuUGCUCGGGC- -5'
29523 3' -55.5 NC_006151.1 + 47526 0.72 0.614759
Target:  5'- -aGGGCGUGCgguugaagCUCUGCAGCGAgaGCCCGa -3'
miRNA:   3'- cgUCUGUACG--------GAGGUGUUGCU--CGGGC- -5'
29523 3' -55.5 NC_006151.1 + 82927 0.71 0.644637
Target:  5'- cGCAGACGuUGuCCcCCGCGGCGAggcgcgcGCCCa -3'
miRNA:   3'- -CGUCUGU-AC-GGaGGUGUUGCU-------CGGGc -5'
29523 3' -55.5 NC_006151.1 + 103963 0.71 0.645667
Target:  5'- cGCGGcCGUGCuggacucuagCUCCAUcgUGGGCCCGg -3'
miRNA:   3'- -CGUCuGUACG----------GAGGUGuuGCUCGGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.