miRNA display CGI


Results 1 - 20 of 167 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29523 3' -55.5 NC_006151.1 + 1172 0.66 0.897027
Target:  5'- cCAGACcgGCCgggaCgAgAGCGAGCgCCGu -3'
miRNA:   3'- cGUCUGuaCGGa---GgUgUUGCUCG-GGC- -5'
29523 3' -55.5 NC_006151.1 + 1783 0.67 0.889673
Target:  5'- -gAGGCAugucUGCCUCCcacggcggcugGCGGCGGacgcgguGCCCGg -3'
miRNA:   3'- cgUCUGU----ACGGAGG-----------UGUUGCU-------CGGGC- -5'
29523 3' -55.5 NC_006151.1 + 3190 0.66 0.903468
Target:  5'- cGC-GACAcGCC-CguCGACGAGCUCGu -3'
miRNA:   3'- -CGuCUGUaCGGaGguGUUGCUCGGGC- -5'
29523 3' -55.5 NC_006151.1 + 3554 0.69 0.775379
Target:  5'- --cGACG-GCUUCCGCGccGCGGGCUCGu -3'
miRNA:   3'- cguCUGUaCGGAGGUGU--UGCUCGGGC- -5'
29523 3' -55.5 NC_006151.1 + 3710 0.67 0.868967
Target:  5'- gGCGGAU---CgUCCggACGGCGGGCCCGa -3'
miRNA:   3'- -CGUCUGuacGgAGG--UGUUGCUCGGGC- -5'
29523 3' -55.5 NC_006151.1 + 3801 0.67 0.853623
Target:  5'- gGCGGGCGcGCCgCC-CGACaGGCCCu -3'
miRNA:   3'- -CGUCUGUaCGGaGGuGUUGcUCGGGc -5'
29523 3' -55.5 NC_006151.1 + 5346 0.66 0.915635
Target:  5'- gGCGGACAUGCUg-CGCGGCcuGGCCg- -3'
miRNA:   3'- -CGUCUGUACGGagGUGUUGc-UCGGgc -5'
29523 3' -55.5 NC_006151.1 + 7187 0.66 0.915635
Target:  5'- cGCGG-CcgGCCUaCgACcuGCGGGCCCu -3'
miRNA:   3'- -CGUCuGuaCGGA-GgUGu-UGCUCGGGc -5'
29523 3' -55.5 NC_006151.1 + 7543 0.69 0.793901
Target:  5'- gGCGGuCGUGCgCgcgcucugCCGCGGgGAGCCCc -3'
miRNA:   3'- -CGUCuGUACG-Ga-------GGUGUUgCUCGGGc -5'
29523 3' -55.5 NC_006151.1 + 9637 0.68 0.8291
Target:  5'- gGguGGCGUaacCCagggCCACGACGAGCaCCGc -3'
miRNA:   3'- -CguCUGUAc--GGa---GGUGUUGCUCG-GGC- -5'
29523 3' -55.5 NC_006151.1 + 10297 0.67 0.876319
Target:  5'- cGCGGGCGUggGCCUCgGCcACGcGUCCc -3'
miRNA:   3'- -CGUCUGUA--CGGAGgUGuUGCuCGGGc -5'
29523 3' -55.5 NC_006151.1 + 10625 0.66 0.903468
Target:  5'- cGCGGGacgGCCaCCACGgGCGgccGGCCCGg -3'
miRNA:   3'- -CGUCUguaCGGaGGUGU-UGC---UCGGGC- -5'
29523 3' -55.5 NC_006151.1 + 10904 0.68 0.811831
Target:  5'- cGCGGGCAgcuccuCCUCCACGGcCGGGaCUCGc -3'
miRNA:   3'- -CGUCUGUac----GGAGGUGUU-GCUC-GGGC- -5'
29523 3' -55.5 NC_006151.1 + 11545 0.66 0.909671
Target:  5'- gGCAG-CAggGCCUCCGCggUGcugccguagcuGGCCaCGg -3'
miRNA:   3'- -CGUCuGUa-CGGAGGUGuuGC-----------UCGG-GC- -5'
29523 3' -55.5 NC_006151.1 + 14013 0.66 0.915635
Target:  5'- gGCGGggcGCAcgGCCgugggCGgGACGAGCCCGu -3'
miRNA:   3'- -CGUC---UGUa-CGGag---GUgUUGCUCGGGC- -5'
29523 3' -55.5 NC_006151.1 + 14931 0.67 0.883449
Target:  5'- -------aGCCcgaggCCACGGCGGGCCCGc -3'
miRNA:   3'- cgucuguaCGGa----GGUGUUGCUCGGGC- -5'
29523 3' -55.5 NC_006151.1 + 15773 0.67 0.883449
Target:  5'- cGUcGGCGgcGCuCUCCuGCGACGAGCUCGu -3'
miRNA:   3'- -CGuCUGUa-CG-GAGG-UGUUGCUCGGGC- -5'
29523 3' -55.5 NC_006151.1 + 16081 0.67 0.890353
Target:  5'- cGCGGGgGUGgCgggggCCGCGGCcgagucgacggGAGCCCGc -3'
miRNA:   3'- -CGUCUgUACgGa----GGUGUUG-----------CUCGGGC- -5'
29523 3' -55.5 NC_006151.1 + 17571 0.68 0.837466
Target:  5'- cGCcGACAcggGCCUCCuggacuACAGCGAGaUCCa -3'
miRNA:   3'- -CGuCUGUa--CGGAGG------UGUUGCUC-GGGc -5'
29523 3' -55.5 NC_006151.1 + 17895 0.66 0.897027
Target:  5'- uGCAGAacucCAUGCgCgugCC-CGGCGAGCgCGg -3'
miRNA:   3'- -CGUCU----GUACG-Ga--GGuGUUGCUCGgGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.