Results 1 - 20 of 167 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29523 | 3' | -55.5 | NC_006151.1 | + | 77655 | 0.78 | 0.32314 |
Target: 5'- cGCGGACGUGCCgcgguggaugggcggCCGCGccaGCGcGGCCCGg -3' miRNA: 3'- -CGUCUGUACGGa--------------GGUGU---UGC-UCGGGC- -5' |
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29523 | 3' | -55.5 | NC_006151.1 | + | 14013 | 0.66 | 0.915635 |
Target: 5'- gGCGGggcGCAcgGCCgugggCGgGACGAGCCCGu -3' miRNA: 3'- -CGUC---UGUa-CGGag---GUgUUGCUCGGGC- -5' |
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29523 | 3' | -55.5 | NC_006151.1 | + | 18397 | 0.66 | 0.915635 |
Target: 5'- aGCAcGcACGUGCUggCCgGCGACaGGCCCGa -3' miRNA: 3'- -CGU-C-UGUACGGa-GG-UGUUGcUCGGGC- -5' |
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29523 | 3' | -55.5 | NC_006151.1 | + | 27523 | 0.66 | 0.915635 |
Target: 5'- cGCAGGCccGCCgggCGCG-CGAGCgCGa -3' miRNA: 3'- -CGUCUGuaCGGag-GUGUuGCUCGgGC- -5' |
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29523 | 3' | -55.5 | NC_006151.1 | + | 38550 | 0.66 | 0.915635 |
Target: 5'- gGCGGcgGCGcGCgaCCGCGACGgGGCCCu -3' miRNA: 3'- -CGUC--UGUaCGgaGGUGUUGC-UCGGGc -5' |
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29523 | 3' | -55.5 | NC_006151.1 | + | 39199 | 0.66 | 0.915635 |
Target: 5'- -gAGAac-GCCggcgCgGCGGCGGGCCCGc -3' miRNA: 3'- cgUCUguaCGGa---GgUGUUGCUCGGGC- -5' |
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29523 | 3' | -55.5 | NC_006151.1 | + | 126006 | 0.66 | 0.915635 |
Target: 5'- cGCAGcaccACGUGUUgCCGCGGCGuGUCCu -3' miRNA: 3'- -CGUC----UGUACGGaGGUGUUGCuCGGGc -5' |
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29523 | 3' | -55.5 | NC_006151.1 | + | 20678 | 0.66 | 0.915635 |
Target: 5'- cGUGGGCGgcugcgcgGCCUCgCcCGACGAGCgCCu -3' miRNA: 3'- -CGUCUGUa-------CGGAG-GuGUUGCUCG-GGc -5' |
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29523 | 3' | -55.5 | NC_006151.1 | + | 138772 | 0.66 | 0.915635 |
Target: 5'- -aGGACAUgGCCUCgC-CGGCG-GCCCc -3' miRNA: 3'- cgUCUGUA-CGGAG-GuGUUGCuCGGGc -5' |
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29523 | 3' | -55.5 | NC_006151.1 | + | 7187 | 0.66 | 0.915635 |
Target: 5'- cGCGG-CcgGCCUaCgACcuGCGGGCCCu -3' miRNA: 3'- -CGUCuGuaCGGA-GgUGu-UGCUCGGGc -5' |
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29523 | 3' | -55.5 | NC_006151.1 | + | 5346 | 0.66 | 0.915635 |
Target: 5'- gGCGGACAUGCUg-CGCGGCcuGGCCg- -3' miRNA: 3'- -CGUCUGUACGGagGUGUUGc-UCGGgc -5' |
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29523 | 3' | -55.5 | NC_006151.1 | + | 118986 | 0.66 | 0.915635 |
Target: 5'- cGgGGGCGUugGUCUCgAugguccCGGCGAGCCCGu -3' miRNA: 3'- -CgUCUGUA--CGGAGgU------GUUGCUCGGGC- -5' |
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29523 | 3' | -55.5 | NC_006151.1 | + | 39153 | 0.66 | 0.921358 |
Target: 5'- gGCuGACGUGgCUCgACGacuacgccgucGCGGcGCCCGu -3' miRNA: 3'- -CGuCUGUACgGAGgUGU-----------UGCU-CGGGC- -5' |
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29523 | 3' | -55.5 | NC_006151.1 | + | 106004 | 0.66 | 0.921358 |
Target: 5'- cCAGGCcgcgGCCcgcuaccgcgCCGCGGcCGGGCCCGu -3' miRNA: 3'- cGUCUGua--CGGa---------GGUGUU-GCUCGGGC- -5' |
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29523 | 3' | -55.5 | NC_006151.1 | + | 18257 | 0.66 | 0.921358 |
Target: 5'- cGUGGGCcccgcgGCCcCCGCGGCcgcccgucGGGCCCGg -3' miRNA: 3'- -CGUCUGua----CGGaGGUGUUG--------CUCGGGC- -5' |
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29523 | 3' | -55.5 | NC_006151.1 | + | 46310 | 0.66 | 0.921358 |
Target: 5'- gGCAGGuccaCCgagCCGCAGCGcucGGCCCGg -3' miRNA: 3'- -CGUCUguacGGa--GGUGUUGC---UCGGGC- -5' |
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29523 | 3' | -55.5 | NC_006151.1 | + | 75068 | 0.66 | 0.921358 |
Target: 5'- cGCGGcCA--CCUCCAUGGCGcgcGCCCGc -3' miRNA: 3'- -CGUCuGUacGGAGGUGUUGCu--CGGGC- -5' |
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29523 | 3' | -55.5 | NC_006151.1 | + | 78500 | 0.66 | 0.921358 |
Target: 5'- uGCGGGCGcagGCCgagcgCCACGuccagcagcACGuGGCCCa -3' miRNA: 3'- -CGUCUGUa--CGGa----GGUGU---------UGC-UCGGGc -5' |
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29523 | 3' | -55.5 | NC_006151.1 | + | 87570 | 0.66 | 0.917953 |
Target: 5'- gGCGGACGUgcGCCgggcgaccgagcggcUCCGCgAugGAGgCCGu -3' miRNA: 3'- -CGUCUGUA--CGG---------------AGGUG-UugCUCgGGC- -5' |
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29523 | 3' | -55.5 | NC_006151.1 | + | 51986 | 0.66 | 0.917953 |
Target: 5'- cGUAGACcUGCUcgCCGCGcACGcuggcgugcaccagcAGCCCGg -3' miRNA: 3'- -CGUCUGuACGGa-GGUGU-UGC---------------UCGGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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