miRNA display CGI


Results 21 - 40 of 167 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29523 3' -55.5 NC_006151.1 + 140615 0.66 0.909671
Target:  5'- cGUAGACGUGguaguCCcCCACGGCcGGGCCg- -3'
miRNA:   3'- -CGUCUGUAC-----GGaGGUGUUG-CUCGGgc -5'
29523 3' -55.5 NC_006151.1 + 125295 0.66 0.909671
Target:  5'- gGCGGGCAUGUCggaaUGCGgGCGGGCCgGu -3'
miRNA:   3'- -CGUCUGUACGGag--GUGU-UGCUCGGgC- -5'
29523 3' -55.5 NC_006151.1 + 103315 0.66 0.909671
Target:  5'- gGCGacGGCcgGCC-CCGCGGCccgcucGGGCCCa -3'
miRNA:   3'- -CGU--CUGuaCGGaGGUGUUG------CUCGGGc -5'
29523 3' -55.5 NC_006151.1 + 11545 0.66 0.909671
Target:  5'- gGCAG-CAggGCCUCCGCggUGcugccguagcuGGCCaCGg -3'
miRNA:   3'- -CGUCuGUa-CGGAGGUGuuGC-----------UCGG-GC- -5'
29523 3' -55.5 NC_006151.1 + 135164 0.66 0.909671
Target:  5'- cGCGGGCGccGCgUcCCGCccCGAGCCCc -3'
miRNA:   3'- -CGUCUGUa-CGgA-GGUGuuGCUCGGGc -5'
29523 3' -55.5 NC_006151.1 + 70687 0.66 0.909671
Target:  5'- gGCGGGUAcGCCUCCugGAaGAGCgCGc -3'
miRNA:   3'- -CGUCUGUaCGGAGGugUUgCUCGgGC- -5'
29523 3' -55.5 NC_006151.1 + 55885 0.66 0.909671
Target:  5'- gGCGGACGUcuccGCCggcaCCAuCGACGccAGCUCGg -3'
miRNA:   3'- -CGUCUGUA----CGGa---GGU-GUUGC--UCGGGC- -5'
29523 3' -55.5 NC_006151.1 + 117128 0.66 0.903468
Target:  5'- gGCgAGGCccGCCUCacggggcgGCGGCGGGCCgCGu -3'
miRNA:   3'- -CG-UCUGuaCGGAGg-------UGUUGCUCGG-GC- -5'
29523 3' -55.5 NC_006151.1 + 19034 0.66 0.903468
Target:  5'- aGguGACc-GCCUucgaCCGCGACGAGaacCCCGu -3'
miRNA:   3'- -CguCUGuaCGGA----GGUGUUGCUC---GGGC- -5'
29523 3' -55.5 NC_006151.1 + 10625 0.66 0.903468
Target:  5'- cGCGGGacgGCCaCCACGgGCGgccGGCCCGg -3'
miRNA:   3'- -CGUCUguaCGGaGGUGU-UGC---UCGGGC- -5'
29523 3' -55.5 NC_006151.1 + 86865 0.66 0.903468
Target:  5'- uGCGGACGcGCCcCgGCGGCGcGCUCa -3'
miRNA:   3'- -CGUCUGUaCGGaGgUGUUGCuCGGGc -5'
29523 3' -55.5 NC_006151.1 + 84982 0.66 0.903468
Target:  5'- --cGACGUcgGCgUCCACGugGAugauGCCCGc -3'
miRNA:   3'- cguCUGUA--CGgAGGUGUugCU----CGGGC- -5'
29523 3' -55.5 NC_006151.1 + 58104 0.66 0.903468
Target:  5'- cGCuGGCGcGCCUgCGCGugGucCCCGg -3'
miRNA:   3'- -CGuCUGUaCGGAgGUGUugCucGGGC- -5'
29523 3' -55.5 NC_006151.1 + 3190 0.66 0.903468
Target:  5'- cGC-GACAcGCC-CguCGACGAGCUCGu -3'
miRNA:   3'- -CGuCUGUaCGGaGguGUUGCUCGGGC- -5'
29523 3' -55.5 NC_006151.1 + 46652 0.66 0.903468
Target:  5'- gGCGcGCggGCUUUUAgCGGCGGGCCCGc -3'
miRNA:   3'- -CGUcUGuaCGGAGGU-GUUGCUCGGGC- -5'
29523 3' -55.5 NC_006151.1 + 122715 0.66 0.902834
Target:  5'- aGCAGccgGCGcGCCUCCACcgcggcgGACGcGCgCCGg -3'
miRNA:   3'- -CGUC---UGUaCGGAGGUG-------UUGCuCG-GGC- -5'
29523 3' -55.5 NC_006151.1 + 34226 0.66 0.90092
Target:  5'- cGCAGACccagccgccgcgGUCUCCGCuGGCG-GCCCc -3'
miRNA:   3'- -CGUCUGua----------CGGAGGUG-UUGCuCGGGc -5'
29523 3' -55.5 NC_006151.1 + 19535 0.66 0.897027
Target:  5'- cGCGGGCc-GCCUCgGCcucgcCGAcGCCCGg -3'
miRNA:   3'- -CGUCUGuaCGGAGgUGuu---GCU-CGGGC- -5'
29523 3' -55.5 NC_006151.1 + 21468 0.66 0.897027
Target:  5'- gGCGGcGCGUGCCgcuUCCACGcgcGCGucgcGCUCGa -3'
miRNA:   3'- -CGUC-UGUACGG---AGGUGU---UGCu---CGGGC- -5'
29523 3' -55.5 NC_006151.1 + 23414 0.66 0.897027
Target:  5'- --cGGCGUG-CUCCACGGgcAGCCCGu -3'
miRNA:   3'- cguCUGUACgGAGGUGUUgcUCGGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.