miRNA display CGI


Results 1 - 20 of 805 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29523 5' -66.2 NC_006151.1 + 50612 0.95 0.004068
Target:  5'- cCCGCGCCGCCGCGGCAGCGugCaCGCc -3'
miRNA:   3'- cGGCGCGGCGGCGCCGUCGCugG-GCG- -5'
29523 5' -66.2 NC_006151.1 + 50684 0.94 0.005003
Target:  5'- cCCGCGCCGCCGCGGCAGCGuCCaCGCc -3'
miRNA:   3'- cGGCGCGGCGGCGCCGUCGCuGG-GCG- -5'
29523 5' -66.2 NC_006151.1 + 96208 0.93 0.006478
Target:  5'- cGCCGCGUCGCCGUGGCGGCGG-CCGCg -3'
miRNA:   3'- -CGGCGCGGCGGCGCCGUCGCUgGGCG- -5'
29523 5' -66.2 NC_006151.1 + 64469 0.92 0.007183
Target:  5'- gGCgCGCGCCGCCGCGGCGGgGacGCCCGCg -3'
miRNA:   3'- -CG-GCGCGGCGGCGCCGUCgC--UGGGCG- -5'
29523 5' -66.2 NC_006151.1 + 57472 0.88 0.01404
Target:  5'- uGCCGCGCCGCgGCGGCcucgcaGGCGACgCGCa -3'
miRNA:   3'- -CGGCGCGGCGgCGCCG------UCGCUGgGCG- -5'
29523 5' -66.2 NC_006151.1 + 5240 0.87 0.016383
Target:  5'- cGCCGCGCgGCgGCGGCGGgGGCCCGg -3'
miRNA:   3'- -CGGCGCGgCGgCGCCGUCgCUGGGCg -5'
29523 5' -66.2 NC_006151.1 + 98197 0.87 0.01765
Target:  5'- cGUCGCGCCGCgcggggucgagugCGCGGCGGCG-CCCGCg -3'
miRNA:   3'- -CGGCGCGGCG-------------GCGCCGUCGCuGGGCG- -5'
29523 5' -66.2 NC_006151.1 + 66559 0.86 0.020641
Target:  5'- gGCCGCGCCGCCGUGGaccCGGCG-CUCGCg -3'
miRNA:   3'- -CGGCGCGGCGGCGCC---GUCGCuGGGCG- -5'
29523 5' -66.2 NC_006151.1 + 11237 0.86 0.020641
Target:  5'- gGCCGCGaggGCCGCGGCGGCGACCCc- -3'
miRNA:   3'- -CGGCGCgg-CGGCGCCGUCGCUGGGcg -5'
29523 5' -66.2 NC_006151.1 + 118142 0.85 0.02287
Target:  5'- cGCCGaCGaCGCCGCGGCGGUGGCgCCGCu -3'
miRNA:   3'- -CGGC-GCgGCGGCGCCGUCGCUG-GGCG- -5'
29523 5' -66.2 NC_006151.1 + 64619 0.85 0.024695
Target:  5'- cGCCGCGCCGCCggccGCGgggcGCGGCGcCCCGCg -3'
miRNA:   3'- -CGGCGCGGCGG----CGC----CGUCGCuGGGCG- -5'
29523 5' -66.2 NC_006151.1 + 130369 0.84 0.027849
Target:  5'- gGCCGCGCgCGCCGCGGCGuccagcGCGaaggccagcgccucGCCCGCg -3'
miRNA:   3'- -CGGCGCG-GCGGCGCCGU------CGC--------------UGGGCG- -5'
29523 5' -66.2 NC_006151.1 + 141640 0.83 0.032706
Target:  5'- uGCCGCGgCGgCGCGGCGGgGcCCCGCg -3'
miRNA:   3'- -CGGCGCgGCgGCGCCGUCgCuGGGCG- -5'
29523 5' -66.2 NC_006151.1 + 114135 0.83 0.035303
Target:  5'- cGCCGcCGCCgaGCCGCGGCucgggcgcAGCGACCgCGCg -3'
miRNA:   3'- -CGGC-GCGG--CGGCGCCG--------UCGCUGG-GCG- -5'
29523 5' -66.2 NC_006151.1 + 130905 0.82 0.036212
Target:  5'- gGCCGuCGCCGUCGuCGGUGGCcgGGCCCGCg -3'
miRNA:   3'- -CGGC-GCGGCGGC-GCCGUCG--CUGGGCG- -5'
29523 5' -66.2 NC_006151.1 + 39969 0.82 0.036212
Target:  5'- cGCCGuCGCCGCCGCGG--GCGcCCCGCc -3'
miRNA:   3'- -CGGC-GCGGCGGCGCCguCGCuGGGCG- -5'
29523 5' -66.2 NC_006151.1 + 65771 0.82 0.038101
Target:  5'- cCCGuCGCCGCCgGCGGCGGCGAUggcgCCGCc -3'
miRNA:   3'- cGGC-GCGGCGG-CGCCGUCGCUG----GGCG- -5'
29523 5' -66.2 NC_006151.1 + 57505 0.82 0.038101
Target:  5'- -aCGCGCUcgGCCGCGGCGGCGGCggCCGCc -3'
miRNA:   3'- cgGCGCGG--CGGCGCCGUCGCUG--GGCG- -5'
29523 5' -66.2 NC_006151.1 + 39026 0.82 0.040087
Target:  5'- cGCCGCGCCGCCuggauGCGGCAGauagcCGACCC-Cg -3'
miRNA:   3'- -CGGCGCGGCGG-----CGCCGUC-----GCUGGGcG- -5'
29523 5' -66.2 NC_006151.1 + 76867 0.82 0.042174
Target:  5'- aGCCGCGCCGCCGCcaGGagcccCAGCGccGCCUGCu -3'
miRNA:   3'- -CGGCGCGGCGGCG--CC-----GUCGC--UGGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.