miRNA display CGI


Results 1 - 20 of 805 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29523 5' -66.2 NC_006151.1 + 1153 0.69 0.290015
Target:  5'- aGCgaGCGCCGuaugggggcCCGCGcgcucGCGGCG-CCCGCu -3'
miRNA:   3'- -CGg-CGCGGC---------GGCGC-----CGUCGCuGGGCG- -5'
29523 5' -66.2 NC_006151.1 + 1725 0.77 0.094719
Target:  5'- cGCCGCcaccuccGCCGCCGCcGCAGCcaccuccggccggggGAUCCGCg -3'
miRNA:   3'- -CGGCG-------CGGCGGCGcCGUCG---------------CUGGGCG- -5'
29523 5' -66.2 NC_006151.1 + 2482 0.78 0.079059
Target:  5'- gGCCGCGCggUGCCcgaaGGCGGCG-CCCGCg -3'
miRNA:   3'- -CGGCGCG--GCGGcg--CCGUCGCuGGGCG- -5'
29523 5' -66.2 NC_006151.1 + 2926 0.74 0.145306
Target:  5'- cGCCGCGCCgaGCCGCGaGCagagguacuccacGGCG-CCgGCg -3'
miRNA:   3'- -CGGCGCGG--CGGCGC-CG-------------UCGCuGGgCG- -5'
29523 5' -66.2 NC_006151.1 + 3096 0.71 0.216946
Target:  5'- cCCGCGUCGUcgagCGCGGCucgagcuGCGugCUGCc -3'
miRNA:   3'- cGGCGCGGCG----GCGCCGu------CGCugGGCG- -5'
29523 5' -66.2 NC_006151.1 + 3102 0.75 0.117215
Target:  5'- cGCCGagagGCCGCCGCGGC-GCGGguCCCa- -3'
miRNA:   3'- -CGGCg---CGGCGGCGCCGuCGCU--GGGcg -5'
29523 5' -66.2 NC_006151.1 + 3163 0.69 0.32287
Target:  5'- cGCCgGCGCCGCCuGCGGgAcGUG-CgCUGCa -3'
miRNA:   3'- -CGG-CGCGGCGG-CGCCgU-CGCuG-GGCG- -5'
29523 5' -66.2 NC_006151.1 + 3262 0.66 0.462918
Target:  5'- aUCGUgGCCaCCGCGGgGGCgGugCUGCa -3'
miRNA:   3'- cGGCG-CGGcGGCGCCgUCG-CugGGCG- -5'
29523 5' -66.2 NC_006151.1 + 3264 0.76 0.111639
Target:  5'- --gGCGCCGCgGCGcGCGGCGAUgUGCg -3'
miRNA:   3'- cggCGCGGCGgCGC-CGUCGCUGgGCG- -5'
29523 5' -66.2 NC_006151.1 + 3411 0.69 0.302833
Target:  5'- gGCCGCacGCCaCCGaGGCGGCGcgcguGCuCCGCg -3'
miRNA:   3'- -CGGCG--CGGcGGCgCCGUCGC-----UG-GGCG- -5'
29523 5' -66.2 NC_006151.1 + 3992 0.72 0.18888
Target:  5'- gGCCGCggccacguugGCCggggcgaagaggGCCGCGGCguagguccaGGCGGCCuCGCg -3'
miRNA:   3'- -CGGCG----------CGG------------CGGCGCCG---------UCGCUGG-GCG- -5'
29523 5' -66.2 NC_006151.1 + 4004 0.68 0.373393
Target:  5'- cGCCcCGCCGcCCGCcaccuGCAcaccGCGGcCCCGCu -3'
miRNA:   3'- -CGGcGCGGC-GGCGc----CGU----CGCU-GGGCG- -5'
29523 5' -66.2 NC_006151.1 + 4223 0.66 0.462918
Target:  5'- cGCgCGCGucuCCGgCGCGaCGGCcacGCCCGCg -3'
miRNA:   3'- -CG-GCGC---GGCgGCGCcGUCGc--UGGGCG- -5'
29523 5' -66.2 NC_006151.1 + 4265 0.66 0.453454
Target:  5'- gGUCGgGgCGCUGgagcuccUGGCGGCGACgcugCCGCa -3'
miRNA:   3'- -CGGCgCgGCGGC-------GCCGUCGCUG----GGCG- -5'
29523 5' -66.2 NC_006151.1 + 4327 0.74 0.149178
Target:  5'- gGCCGgGCUG-CGCGGCGGCGAaggCgGCg -3'
miRNA:   3'- -CGGCgCGGCgGCGCCGUCGCUg--GgCG- -5'
29523 5' -66.2 NC_006151.1 + 4744 0.69 0.314068
Target:  5'- -gCGCGCCGCgCGCGggucguguacgcgcGCcGCGACugCCGCg -3'
miRNA:   3'- cgGCGCGGCG-GCGC--------------CGuCGCUG--GGCG- -5'
29523 5' -66.2 NC_006151.1 + 4790 0.78 0.079059
Target:  5'- cCCG-GCCGCggCGCGGUAGCGGgCCGCg -3'
miRNA:   3'- cGGCgCGGCG--GCGCCGUCGCUgGGCG- -5'
29523 5' -66.2 NC_006151.1 + 4938 0.72 0.207215
Target:  5'- aGCgGC-CCGUCGguCGGCGGgGGCCCGUc -3'
miRNA:   3'- -CGgCGcGGCGGC--GCCGUCgCUGGGCG- -5'
29523 5' -66.2 NC_006151.1 + 5081 0.76 0.098767
Target:  5'- gGCCGCGggGCCGCGGCGgGCG-CCgGCg -3'
miRNA:   3'- -CGGCGCggCGGCGCCGU-CGCuGGgCG- -5'
29523 5' -66.2 NC_006151.1 + 5138 0.69 0.329766
Target:  5'- aGCUGCcugcggGCCcgGCaCGCGcGCAGCccgccGGCCCGCa -3'
miRNA:   3'- -CGGCG------CGG--CG-GCGC-CGUCG-----CUGGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.