Results 1 - 20 of 805 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29523 | 5' | -66.2 | NC_006151.1 | + | 50612 | 0.95 | 0.004068 |
Target: 5'- cCCGCGCCGCCGCGGCAGCGugCaCGCc -3' miRNA: 3'- cGGCGCGGCGGCGCCGUCGCugG-GCG- -5' |
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29523 | 5' | -66.2 | NC_006151.1 | + | 111903 | 0.66 | 0.488352 |
Target: 5'- cGCCGCGgUGCgcgaacgugaucaCGgGGgGGCGGCgCGCn -3' miRNA: 3'- -CGGCGCgGCG-------------GCgCCgUCGCUGgGCG- -5' |
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29523 | 5' | -66.2 | NC_006151.1 | + | 84300 | 0.66 | 0.488352 |
Target: 5'- gGCCgGCGUCGCgcagcagCGCGGCGaucuCGGCCUuGCg -3' miRNA: 3'- -CGG-CGCGGCG-------GCGCCGUc---GCUGGG-CG- -5' |
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29523 | 5' | -66.2 | NC_006151.1 | + | 124180 | 0.66 | 0.488352 |
Target: 5'- cGCgGgGCCcaccgggGCCaGCGGCgcgGGCGGCCgGUc -3' miRNA: 3'- -CGgCgCGG-------CGG-CGCCG---UCGCUGGgCG- -5' |
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29523 | 5' | -66.2 | NC_006151.1 | + | 45151 | 0.66 | 0.483919 |
Target: 5'- aGUCGCGCauCcuggaguucuucaugGCCGCgGGCcGCGagacGCCCGCg -3' miRNA: 3'- -CGGCGCG--G---------------CGGCG-CCGuCGC----UGGGCG- -5' |
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29523 | 5' | -66.2 | NC_006151.1 | + | 11681 | 0.66 | 0.480387 |
Target: 5'- gGCCgcggGCGCCGCCGuCGuCAGCGcGCCa-- -3' miRNA: 3'- -CGG----CGCGGCGGC-GCcGUCGC-UGGgcg -5' |
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29523 | 5' | -66.2 | NC_006151.1 | + | 70059 | 0.66 | 0.480387 |
Target: 5'- cGCCGCGUa--CGCGGCcGUGAagcCCaCGCc -3' miRNA: 3'- -CGGCGCGgcgGCGCCGuCGCU---GG-GCG- -5' |
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29523 | 5' | -66.2 | NC_006151.1 | + | 88970 | 0.66 | 0.480387 |
Target: 5'- cGCUGCagaugGCCcuccuggacuuuGUgCGCGGCAucGCGGCCUGCu -3' miRNA: 3'- -CGGCG-----CGG------------CG-GCGCCGU--CGCUGGGCG- -5' |
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29523 | 5' | -66.2 | NC_006151.1 | + | 141642 | 0.66 | 0.480387 |
Target: 5'- cGCCggggaggcaaGCGCCGCCG-GGCcgaGGgGACCgaggcCGCc -3' miRNA: 3'- -CGG----------CGCGGCGGCgCCG---UCgCUGG-----GCG- -5' |
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29523 | 5' | -66.2 | NC_006151.1 | + | 5945 | 0.66 | 0.488352 |
Target: 5'- cGCCGCGCCGggcgacgaggaCUG-GGCggacugggacgcgGGCGucCCCGCc -3' miRNA: 3'- -CGGCGCGGC-----------GGCgCCG-------------UCGCu-GGGCG- -5' |
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29523 | 5' | -66.2 | NC_006151.1 | + | 133457 | 0.66 | 0.489241 |
Target: 5'- aCCuCGagaGCgGCGGCGGCGGuCgCCGCg -3' miRNA: 3'- cGGcGCgg-CGgCGCCGUCGCU-G-GGCG- -5' |
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29523 | 5' | -66.2 | NC_006151.1 | + | 99280 | 0.66 | 0.489241 |
Target: 5'- aCCGCggGUCGCCGUccgGGCGGCGGCg--- -3' miRNA: 3'- cGGCG--CGGCGGCG---CCGUCGCUGggcg -5' |
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29523 | 5' | -66.2 | NC_006151.1 | + | 79236 | 0.66 | 0.489241 |
Target: 5'- cGCCucgGCGUacaggGCCGCgacGGCGGCGcggGCCaCGCu -3' miRNA: 3'- -CGG---CGCGg----CGGCG---CCGUCGC---UGG-GCG- -5' |
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29523 | 5' | -66.2 | NC_006151.1 | + | 62890 | 0.66 | 0.489241 |
Target: 5'- cGCCGUcuCC-CCGaCGGaCGGCG-CCCGUg -3' miRNA: 3'- -CGGCGc-GGcGGC-GCC-GUCGCuGGGCG- -5' |
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29523 | 5' | -66.2 | NC_006151.1 | + | 68182 | 0.66 | 0.489241 |
Target: 5'- cGCaGCGCCGCCaGC-GUGGCGuCCaCGUc -3' miRNA: 3'- -CGgCGCGGCGG-CGcCGUCGCuGG-GCG- -5' |
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29523 | 5' | -66.2 | NC_006151.1 | + | 100808 | 0.66 | 0.489241 |
Target: 5'- gGCCGgGCaucccCGCCGCGGgGaugugugcguGCGAgCCGg -3' miRNA: 3'- -CGGCgCG-----GCGGCGCCgU----------CGCUgGGCg -5' |
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29523 | 5' | -66.2 | NC_006151.1 | + | 7629 | 0.66 | 0.489241 |
Target: 5'- -gCGCGCCGCCcCGGCGucaCGuuCUGCc -3' miRNA: 3'- cgGCGCGGCGGcGCCGUc--GCugGGCG- -5' |
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29523 | 5' | -66.2 | NC_006151.1 | + | 46830 | 0.66 | 0.489241 |
Target: 5'- gGgCGCGCagCGCCucgagcuCGGCGGCGaggGCCCGg -3' miRNA: 3'- -CgGCGCG--GCGGc------GCCGUCGC---UGGGCg -5' |
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29523 | 5' | -66.2 | NC_006151.1 | + | 77325 | 0.66 | 0.489241 |
Target: 5'- cCCGgGCggccaGCCGCaGGUGGCGcucuacauCCCGCc -3' miRNA: 3'- cGGCgCGg----CGGCG-CCGUCGCu-------GGGCG- -5' |
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29523 | 5' | -66.2 | NC_006151.1 | + | 78789 | 0.66 | 0.489241 |
Target: 5'- -gCGCGCgGCCaGCuccucaGGCAGCGAguUCgGCa -3' miRNA: 3'- cgGCGCGgCGG-CG------CCGUCGCU--GGgCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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