miRNA display CGI


Results 21 - 40 of 805 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29523 5' -66.2 NC_006151.1 + 40794 0.66 0.480387
Target:  5'- cGCCaacuuugaCGCCGUggaCGCGGgGGCG-CCCGg -3'
miRNA:   3'- -CGGc-------GCGGCG---GCGCCgUCGCuGGGCg -5'
29523 5' -66.2 NC_006151.1 + 30097 0.66 0.480387
Target:  5'- gGCCGCaaCCGCaCGCacGGCgAGUG-CCUGCu -3'
miRNA:   3'- -CGGCGc-GGCG-GCG--CCG-UCGCuGGGCG- -5'
29523 5' -66.2 NC_006151.1 + 141642 0.66 0.480387
Target:  5'- cGCCggggaggcaaGCGCCGCCG-GGCcgaGGgGACCgaggcCGCc -3'
miRNA:   3'- -CGG----------CGCGGCGGCgCCG---UCgCUGG-----GCG- -5'
29523 5' -66.2 NC_006151.1 + 88970 0.66 0.480387
Target:  5'- cGCUGCagaugGCCcuccuggacuuuGUgCGCGGCAucGCGGCCUGCu -3'
miRNA:   3'- -CGGCG-----CGG------------CG-GCGCCGU--CGCUGGGCG- -5'
29523 5' -66.2 NC_006151.1 + 70059 0.66 0.480387
Target:  5'- cGCCGCGUa--CGCGGCcGUGAagcCCaCGCc -3'
miRNA:   3'- -CGGCGCGgcgGCGCCGuCGCU---GG-GCG- -5'
29523 5' -66.2 NC_006151.1 + 11681 0.66 0.480387
Target:  5'- gGCCgcggGCGCCGCCGuCGuCAGCGcGCCa-- -3'
miRNA:   3'- -CGG----CGCGGCGGC-GCcGUCGC-UGGgcg -5'
29523 5' -66.2 NC_006151.1 + 136305 0.66 0.479506
Target:  5'- cUCGCGCgGgCGCgaggcgcaugcucGGCAcGCGACCCa- -3'
miRNA:   3'- cGGCGCGgCgGCG-------------CCGU-CGCUGGGcg -5'
29523 5' -66.2 NC_006151.1 + 82273 0.66 0.479506
Target:  5'- gGCCGCcagCGCCGCGgagagccauuucaGCAGCGccgucgucuuGCCCGa -3'
miRNA:   3'- -CGGCGcg-GCGGCGC-------------CGUCGC----------UGGGCg -5'
29523 5' -66.2 NC_006151.1 + 75920 0.66 0.479506
Target:  5'- aGCCgGCGUCGUugaccaccaCGUGGCgcccgcgGGCGuccaGCCCGCc -3'
miRNA:   3'- -CGG-CGCGGCG---------GCGCCG-------UCGC----UGGGCG- -5'
29523 5' -66.2 NC_006151.1 + 42287 0.66 0.479506
Target:  5'- gGCCGCccugacgGCCgacGCCGUGGaC-GCGuGCCUGCg -3'
miRNA:   3'- -CGGCG-------CGG---CGGCGCC-GuCGC-UGGGCG- -5'
29523 5' -66.2 NC_006151.1 + 15806 0.66 0.477746
Target:  5'- cGUCGCGCaCGCCgaucccggGCgggaacuccucgucGGCGGCGcucuCCUGCg -3'
miRNA:   3'- -CGGCGCG-GCGG--------CG--------------CCGUCGCu---GGGCG- -5'
29523 5' -66.2 NC_006151.1 + 95857 0.66 0.472486
Target:  5'- cGCgGCgGCCGCaggaaaucuacuguaGUauuuGGCGGCGGCgCGCg -3'
miRNA:   3'- -CGgCG-CGGCGg--------------CG----CCGUCGCUGgGCG- -5'
29523 5' -66.2 NC_006151.1 + 45605 0.66 0.471612
Target:  5'- -gCGCGUCGuCCGCGuucuCGGCGGCC-GCc -3'
miRNA:   3'- cgGCGCGGC-GGCGCc---GUCGCUGGgCG- -5'
29523 5' -66.2 NC_006151.1 + 118957 0.66 0.471612
Target:  5'- aGCCcguaaaaguuggGCGCCGCCacguuGCaGCGcGCGGCCC-Cg -3'
miRNA:   3'- -CGG------------CGCGGCGG-----CGcCGU-CGCUGGGcG- -5'
29523 5' -66.2 NC_006151.1 + 6158 0.66 0.471612
Target:  5'- -gCGCGgguuCCGCCGCGcGguGCucGACgCGCu -3'
miRNA:   3'- cgGCGC----GGCGGCGC-CguCG--CUGgGCG- -5'
29523 5' -66.2 NC_006151.1 + 17883 0.66 0.471612
Target:  5'- uGCgCGUGCCcgGCgagCGCGGCacgugcuacAGCcGCCCGCu -3'
miRNA:   3'- -CG-GCGCGG--CG---GCGCCG---------UCGcUGGGCG- -5'
29523 5' -66.2 NC_006151.1 + 21277 0.66 0.471612
Target:  5'- cGUgGUGCCGCCG-GaGCuguaCGACCCGg -3'
miRNA:   3'- -CGgCGCGGCGGCgC-CGuc--GCUGGGCg -5'
29523 5' -66.2 NC_006151.1 + 31229 0.66 0.471612
Target:  5'- cGCuCGuCGCCGCCGCcaGGCGcuGCGugUgGg -3'
miRNA:   3'- -CG-GC-GCGGCGGCG--CCGU--CGCugGgCg -5'
29523 5' -66.2 NC_006151.1 + 57138 0.66 0.471612
Target:  5'- gGCCGUGCuCGCC-CGcGCcGUgGGCCCGg -3'
miRNA:   3'- -CGGCGCG-GCGGcGC-CGuCG-CUGGGCg -5'
29523 5' -66.2 NC_006151.1 + 59443 0.66 0.471612
Target:  5'- gGgUGCGCCGCCccgacugcguguGCGuGguGCGGCuggggguggggCCGCa -3'
miRNA:   3'- -CgGCGCGGCGG------------CGC-CguCGCUG-----------GGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.