miRNA display CGI


Results 1 - 20 of 316 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29524 3' -62.2 NC_006151.1 + 68640 0.66 0.637768
Target:  5'- cGCGUCGCCggcuccacugccacgGCCGgcGGGGC-CC-GCGUc -3'
miRNA:   3'- uCGCAGCGG---------------CGGU--CCUCGaGGuCGCG- -5'
29524 3' -62.2 NC_006151.1 + 50699 0.66 0.637768
Target:  5'- cAGCGUCcacgccucggcgacgGCCGCCccGGcGgUCCAGCuGCc -3'
miRNA:   3'- -UCGCAG---------------CGGCGGu-CCuCgAGGUCG-CG- -5'
29524 3' -62.2 NC_006151.1 + 11028 0.66 0.633809
Target:  5'- cGC-UCGCCgggccggccgGCCGGGGGC-CCGGCc- -3'
miRNA:   3'- uCGcAGCGG----------CGGUCCUCGaGGUCGcg -5'
29524 3' -62.2 NC_006151.1 + 52371 0.66 0.633809
Target:  5'- cGGCG-CGCCcccgggGCCcgcGGGGGCggCgGGCGCc -3'
miRNA:   3'- -UCGCaGCGG------CGG---UCCUCGa-GgUCGCG- -5'
29524 3' -62.2 NC_006151.1 + 53751 0.66 0.633809
Target:  5'- uAGCGgcucgaguaCGCCGCCGaGAGCU-UGGCGUa -3'
miRNA:   3'- -UCGCa--------GCGGCGGUcCUCGAgGUCGCG- -5'
29524 3' -62.2 NC_006151.1 + 60806 0.66 0.633809
Target:  5'- gGGC-UCGCCGCgCAGcuccacgagcAGCUCCAcgagcuGCGCg -3'
miRNA:   3'- -UCGcAGCGGCG-GUCc---------UCGAGGU------CGCG- -5'
29524 3' -62.2 NC_006151.1 + 70128 0.66 0.633809
Target:  5'- cGCG-CGCCGCaggAGGGGgUCCGggacgaugacGUGCa -3'
miRNA:   3'- uCGCaGCGGCGg--UCCUCgAGGU----------CGCG- -5'
29524 3' -62.2 NC_006151.1 + 36182 0.66 0.633809
Target:  5'- cAGCaGcC-CCGCCGGG-GCUCgGGCGa -3'
miRNA:   3'- -UCG-CaGcGGCGGUCCuCGAGgUCGCg -5'
29524 3' -62.2 NC_006151.1 + 85828 0.66 0.633809
Target:  5'- cGGUG-CGCCuggugGCgCuGGAGCUgcagaaccgCCAGCGCg -3'
miRNA:   3'- -UCGCaGCGG-----CG-GuCCUCGA---------GGUCGCG- -5'
29524 3' -62.2 NC_006151.1 + 67513 0.66 0.633809
Target:  5'- cGCGUCcggguccaggGCCaCCAGGcGCcagCCGGCGUc -3'
miRNA:   3'- uCGCAG----------CGGcGGUCCuCGa--GGUCGCG- -5'
29524 3' -62.2 NC_006151.1 + 132694 0.66 0.63183
Target:  5'- aGGCGcgcguacagguccUCGuuGCCGGGcaggcacgagaaaGGUccucguUCCAGCGCu -3'
miRNA:   3'- -UCGC-------------AGCggCGGUCC-------------UCG------AGGUCGCG- -5'
29524 3' -62.2 NC_006151.1 + 112020 0.66 0.623912
Target:  5'- cGGCGauuuUC-CCGgCGGGAGCUggggCCGGCGg -3'
miRNA:   3'- -UCGC----AGcGGCgGUCCUCGA----GGUCGCg -5'
29524 3' -62.2 NC_006151.1 + 3242 0.66 0.623912
Target:  5'- aGGCGgCGCgGCgGcGGAGCggggcgCCgcGGCGCg -3'
miRNA:   3'- -UCGCaGCGgCGgU-CCUCGa-----GG--UCGCG- -5'
29524 3' -62.2 NC_006151.1 + 39845 0.66 0.623912
Target:  5'- uGCG--GCCGCCGGGgccucgccgAGCUCC-GCGg -3'
miRNA:   3'- uCGCagCGGCGGUCC---------UCGAGGuCGCg -5'
29524 3' -62.2 NC_006151.1 + 58019 0.66 0.623912
Target:  5'- cGCGgccaccuugaUCGUCGCaaacaGGGGGaagcCCAGCGCg -3'
miRNA:   3'- uCGC----------AGCGGCGg----UCCUCga--GGUCGCG- -5'
29524 3' -62.2 NC_006151.1 + 66227 0.66 0.623912
Target:  5'- cGGCG-CGcCCGCgCAGaAGCUCgaCGGUGCg -3'
miRNA:   3'- -UCGCaGC-GGCG-GUCcUCGAG--GUCGCG- -5'
29524 3' -62.2 NC_006151.1 + 86297 0.66 0.623912
Target:  5'- cGGCGUCGUCaacugcccgcaGCUGGGGGCcgugcucgCCcGCGCc -3'
miRNA:   3'- -UCGCAGCGG-----------CGGUCCUCGa-------GGuCGCG- -5'
29524 3' -62.2 NC_006151.1 + 68267 0.66 0.623912
Target:  5'- cGGCGacggUCGCggCGCCGGGcgccacGGCggCCAGgCGCg -3'
miRNA:   3'- -UCGC----AGCG--GCGGUCC------UCGa-GGUC-GCG- -5'
29524 3' -62.2 NC_006151.1 + 96211 0.66 0.622923
Target:  5'- cGCGUCGCCGUgGcGGcggccgcGGCga-GGCGCa -3'
miRNA:   3'- uCGCAGCGGCGgU-CC-------UCGaggUCGCG- -5'
29524 3' -62.2 NC_006151.1 + 105939 0.66 0.622923
Target:  5'- uGCGccCGCCGCUcaccgAGGGGCUCauggagaCGGCGa -3'
miRNA:   3'- uCGCa-GCGGCGG-----UCCUCGAG-------GUCGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.