miRNA display CGI


Results 1 - 20 of 268 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29524 5' -53.4 NC_006151.1 + 120212 0.66 0.966576
Target:  5'- gCAGCGCGGAGcccccggcgcgcgaCCACgACGGGgaccuGGCGCg -3'
miRNA:   3'- -GUCGUGUUUCua------------GGUG-UGCUC-----CCGCG- -5'
29524 5' -53.4 NC_006151.1 + 27076 0.66 0.966251
Target:  5'- aAGU-CAAAGAgggcgCgGCGC-AGGGCGCg -3'
miRNA:   3'- gUCGuGUUUCUa----GgUGUGcUCCCGCG- -5'
29524 5' -53.4 NC_006151.1 + 74624 0.66 0.966251
Target:  5'- -uGCACGugcuccagcAGGUCCuuguACACGGcGGCGCa -3'
miRNA:   3'- guCGUGUu--------UCUAGG----UGUGCUcCCGCG- -5'
29524 5' -53.4 NC_006151.1 + 107085 0.66 0.966251
Target:  5'- gCAGCugGcGGugUCGCGCGugcucuGGGCGCc -3'
miRNA:   3'- -GUCGugUuUCuaGGUGUGCu-----CCCGCG- -5'
29524 5' -53.4 NC_006151.1 + 134003 0.66 0.966251
Target:  5'- gAGCGCGGGGG-CCACcagcGCGcAGaGCGCg -3'
miRNA:   3'- gUCGUGUUUCUaGGUG----UGC-UCcCGCG- -5'
29524 5' -53.4 NC_006151.1 + 137108 0.66 0.966251
Target:  5'- uGGC-CGGGGA--CGCcUGGGGGCGCg -3'
miRNA:   3'- gUCGuGUUUCUagGUGuGCUCCCGCG- -5'
29524 5' -53.4 NC_006151.1 + 27306 0.66 0.966251
Target:  5'- gGGCGUggGGGUCgAgGCGGGGGaCGg -3'
miRNA:   3'- gUCGUGuuUCUAGgUgUGCUCCC-GCg -5'
29524 5' -53.4 NC_006151.1 + 117179 0.66 0.966251
Target:  5'- gCGGUAgAAGGG-CCGC-CgGGGGGCGUc -3'
miRNA:   3'- -GUCGUgUUUCUaGGUGuG-CUCCCGCG- -5'
29524 5' -53.4 NC_006151.1 + 20596 0.66 0.966251
Target:  5'- cCGGCACuc--GUCCGCggACGAcGGCGUg -3'
miRNA:   3'- -GUCGUGuuucUAGGUG--UGCUcCCGCG- -5'
29524 5' -53.4 NC_006151.1 + 56362 0.66 0.965924
Target:  5'- cCGGCGCGGaagcuacGGcgCCugcuGCACGucGGCGCc -3'
miRNA:   3'- -GUCGUGUU-------UCuaGG----UGUGCucCCGCG- -5'
29524 5' -53.4 NC_006151.1 + 49215 0.66 0.965595
Target:  5'- gCGGCGCGGGGuccccggcucCCACGCcccgcucggcuGGGCGCg -3'
miRNA:   3'- -GUCGUGUUUCua--------GGUGUGcu---------CCCGCG- -5'
29524 5' -53.4 NC_006151.1 + 10907 0.66 0.962879
Target:  5'- cCGGCGCGgaccGGGGUCgGgccCACGGcgccgaggguGGGCGCg -3'
miRNA:   3'- -GUCGUGU----UUCUAGgU---GUGCU----------CCCGCG- -5'
29524 5' -53.4 NC_006151.1 + 3853 0.66 0.962879
Target:  5'- gAGC-CGGGGAggCCGgA-GGGGGCGCc -3'
miRNA:   3'- gUCGuGUUUCUa-GGUgUgCUCCCGCG- -5'
29524 5' -53.4 NC_006151.1 + 63642 0.66 0.962879
Target:  5'- gGGCACAAu-GUCCugACGGccguccaccGGGuCGCu -3'
miRNA:   3'- gUCGUGUUucUAGGugUGCU---------CCC-GCG- -5'
29524 5' -53.4 NC_006151.1 + 71654 0.66 0.962879
Target:  5'- gGGCcguCGAAGAUgCACACGcgcgccacGGGcCGCg -3'
miRNA:   3'- gUCGu--GUUUCUAgGUGUGCu-------CCC-GCG- -5'
29524 5' -53.4 NC_006151.1 + 96638 0.66 0.962879
Target:  5'- gCAGCGCcucGAGcUCgGCgGCGAGGGCccggGCg -3'
miRNA:   3'- -GUCGUGu--UUCuAGgUG-UGCUCCCG----CG- -5'
29524 5' -53.4 NC_006151.1 + 97597 0.66 0.962879
Target:  5'- uCAGCGCGcacgcGGGcacGUgCACcuGCGAGcGGCGCg -3'
miRNA:   3'- -GUCGUGU-----UUC---UAgGUG--UGCUC-CCGCG- -5'
29524 5' -53.4 NC_006151.1 + 5615 0.66 0.962879
Target:  5'- cCGGCGgAGGGGgcgCCGC-CGccgccGGGCGCc -3'
miRNA:   3'- -GUCGUgUUUCUa--GGUGuGCu----CCCGCG- -5'
29524 5' -53.4 NC_006151.1 + 29412 0.66 0.961467
Target:  5'- -cGCGCGGAGAaggcucgguguggCCGCG-GGGGGCGg -3'
miRNA:   3'- guCGUGUUUCUa------------GGUGUgCUCCCGCg -5'
29524 5' -53.4 NC_006151.1 + 64612 0.66 0.95928
Target:  5'- cCAGCgGCGccGcgCCGCcggccGCG-GGGCGCg -3'
miRNA:   3'- -GUCG-UGUuuCuaGGUG-----UGCuCCCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.