miRNA display CGI


Results 61 - 80 of 381 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29526 3' -60.8 NC_006151.1 + 30821 0.66 0.677472
Target:  5'- gCGGGCGGgaGGAGuUGCGUGGGCggagaggaGCg -3'
miRNA:   3'- -GUCCGUCgaCUUC-GCGCGCCUGgg------CG- -5'
29526 3' -60.8 NC_006151.1 + 65305 0.66 0.677472
Target:  5'- cCAGGUGGCUG-AGCcCGCGG--CCGUu -3'
miRNA:   3'- -GUCCGUCGACuUCGcGCGCCugGGCG- -5'
29526 3' -60.8 NC_006151.1 + 123869 0.66 0.677472
Target:  5'- cUAGcGCuGCUGcugcuGGCGCucgccGCGGcCCCGCc -3'
miRNA:   3'- -GUC-CGuCGACu----UCGCG-----CGCCuGGGCG- -5'
29526 3' -60.8 NC_006151.1 + 137918 0.66 0.677472
Target:  5'- -cGGCGGCUGccacGGGCGCcugcuccccuuuGgGGACgCGCc -3'
miRNA:   3'- guCCGUCGAC----UUCGCG------------CgCCUGgGCG- -5'
29526 3' -60.8 NC_006151.1 + 81494 0.66 0.677472
Target:  5'- cCAcGCGGCcGucGGCGagaGCGcGGCCCGCg -3'
miRNA:   3'- -GUcCGUCGaCu-UCGCg--CGC-CUGGGCG- -5'
29526 3' -60.8 NC_006151.1 + 84636 0.66 0.677472
Target:  5'- -cGGC-GCUGGacaacgccauGGC-CGCGGGCgCGCg -3'
miRNA:   3'- guCCGuCGACU----------UCGcGCGCCUGgGCG- -5'
29526 3' -60.8 NC_006151.1 + 54644 0.66 0.677472
Target:  5'- -cGGCGGCgcGAGcGCuGCGUGGACgaGCa -3'
miRNA:   3'- guCCGUCGa-CUU-CG-CGCGCCUGggCG- -5'
29526 3' -60.8 NC_006151.1 + 85775 0.66 0.687367
Target:  5'- -uGGC-GCUGGA-CGCGCacucGAUCCGCg -3'
miRNA:   3'- guCCGuCGACUUcGCGCGc---CUGGGCG- -5'
29526 3' -60.8 NC_006151.1 + 72608 0.66 0.687367
Target:  5'- gGGGCagGGCgGAgacgacgguccGGCGguccCGCGGuCCCGCg -3'
miRNA:   3'- gUCCG--UCGaCU-----------UCGC----GCGCCuGGGCG- -5'
29526 3' -60.8 NC_006151.1 + 52731 0.66 0.687367
Target:  5'- gCGGGCgAGCacgacgcccUGcuGCGCGCGcGCCuCGCa -3'
miRNA:   3'- -GUCCG-UCG---------ACuuCGCGCGCcUGG-GCG- -5'
29526 3' -60.8 NC_006151.1 + 27382 0.66 0.687367
Target:  5'- aCGGGCgagaacGGCggGGAGgGCaCGGGCUCGUa -3'
miRNA:   3'- -GUCCG------UCGa-CUUCgCGcGCCUGGGCG- -5'
29526 3' -60.8 NC_006151.1 + 102833 0.66 0.687367
Target:  5'- aAGGCcauGCUGAuggaccgcaacGGCGCGCaGcgcuUCCGCg -3'
miRNA:   3'- gUCCGu--CGACU-----------UCGCGCGcCu---GGGCG- -5'
29526 3' -60.8 NC_006151.1 + 49820 0.66 0.687367
Target:  5'- gGGGgGGaCgaaggGAcgacgacggcGGCG-GCGGGCCCGCg -3'
miRNA:   3'- gUCCgUC-Ga----CU----------UCGCgCGCCUGGGCG- -5'
29526 3' -60.8 NC_006151.1 + 53245 0.66 0.686379
Target:  5'- gCAGGUucucGCUGgcGCGCacGCGGcacagcuGCCgCGCg -3'
miRNA:   3'- -GUCCGu---CGACuuCGCG--CGCC-------UGG-GCG- -5'
29526 3' -60.8 NC_006151.1 + 69134 0.67 0.637619
Target:  5'- gCGGGCAG----GGCGCGCGGguGCUCGa -3'
miRNA:   3'- -GUCCGUCgacuUCGCGCGCC--UGGGCg -5'
29526 3' -60.8 NC_006151.1 + 109101 0.67 0.637619
Target:  5'- gAGGCccAG-UGAGGCGagcCGCcGGCCCGCg -3'
miRNA:   3'- gUCCG--UCgACUUCGC---GCGcCUGGGCG- -5'
29526 3' -60.8 NC_006151.1 + 122450 0.67 0.637619
Target:  5'- gAGGCGGCguccacgGcGGCG-GCGGGCgCCGa -3'
miRNA:   3'- gUCCGUCGa------CuUCGCgCGCCUG-GGCg -5'
29526 3' -60.8 NC_006151.1 + 118431 0.67 0.637619
Target:  5'- aCGGGCGcGgaGGuguGCGCGCGGcucgGCCUGg -3'
miRNA:   3'- -GUCCGU-CgaCUu--CGCGCGCC----UGGGCg -5'
29526 3' -60.8 NC_006151.1 + 118573 0.67 0.637619
Target:  5'- aCGGGCAc--GAGGCGUgGCGcGugCCGCu -3'
miRNA:   3'- -GUCCGUcgaCUUCGCG-CGC-CugGGCG- -5'
29526 3' -60.8 NC_006151.1 + 51400 0.67 0.637619
Target:  5'- gGGGCgAGCgcgucGcAGCGCGUGcACCCGUc -3'
miRNA:   3'- gUCCG-UCGa----CuUCGCGCGCcUGGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.