miRNA display CGI


Results 81 - 100 of 381 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29526 3' -60.8 NC_006151.1 + 68033 0.67 0.617637
Target:  5'- cCAGGCGGCccgccGGCGCGgCGGGCaCGg -3'
miRNA:   3'- -GUCCGUCGacu--UCGCGC-GCCUGgGCg -5'
29526 3' -60.8 NC_006151.1 + 49668 0.67 0.617637
Target:  5'- cCGGGCcGCgcccgGAGGa-CGCGGACgCGCc -3'
miRNA:   3'- -GUCCGuCGa----CUUCgcGCGCCUGgGCG- -5'
29526 3' -60.8 NC_006151.1 + 47637 0.67 0.617637
Target:  5'- -uGGCGGC---GGCGCGCGGuaCUGCa -3'
miRNA:   3'- guCCGUCGacuUCGCGCGCCugGGCG- -5'
29526 3' -60.8 NC_006151.1 + 40552 0.67 0.617637
Target:  5'- -cGGCGGUggugGAAGCG-GCGGcggcGgCCGCg -3'
miRNA:   3'- guCCGUCGa---CUUCGCgCGCC----UgGGCG- -5'
29526 3' -60.8 NC_006151.1 + 32790 0.67 0.617637
Target:  5'- gCGGGgGGCcGAAGCGgaCGCGGAagaagaCGCg -3'
miRNA:   3'- -GUCCgUCGaCUUCGC--GCGCCUgg----GCG- -5'
29526 3' -60.8 NC_006151.1 + 100759 0.67 0.617637
Target:  5'- gAGG-AGCUgcgcGAGGC-CGCGGACCgCGUc -3'
miRNA:   3'- gUCCgUCGA----CUUCGcGCGCCUGG-GCG- -5'
29526 3' -60.8 NC_006151.1 + 61134 0.67 0.627626
Target:  5'- cCAGGguGCgggUGAAGCuGCGUcggcaggacaGGACCagCGCg -3'
miRNA:   3'- -GUCCguCG---ACUUCG-CGCG----------CCUGG--GCG- -5'
29526 3' -60.8 NC_006151.1 + 99015 0.67 0.627626
Target:  5'- -cGGCcGUcGAGGUGCGCGucUCCGCg -3'
miRNA:   3'- guCCGuCGaCUUCGCGCGCcuGGGCG- -5'
29526 3' -60.8 NC_006151.1 + 131912 0.67 0.627626
Target:  5'- gGGGCGGCaGcaGGGCcucCGCGGugCUGCc -3'
miRNA:   3'- gUCCGUCGaC--UUCGc--GCGCCugGGCG- -5'
29526 3' -60.8 NC_006151.1 + 118573 0.67 0.637619
Target:  5'- aCGGGCAc--GAGGCGUgGCGcGugCCGCu -3'
miRNA:   3'- -GUCCGUcgaCUUCGCG-CGC-CugGGCG- -5'
29526 3' -60.8 NC_006151.1 + 118431 0.67 0.637619
Target:  5'- aCGGGCGcGgaGGuguGCGCGCGGcucgGCCUGg -3'
miRNA:   3'- -GUCCGU-CgaCUu--CGCGCGCC----UGGGCg -5'
29526 3' -60.8 NC_006151.1 + 122450 0.67 0.637619
Target:  5'- gAGGCGGCguccacgGcGGCG-GCGGGCgCCGa -3'
miRNA:   3'- gUCCGUCGa------CuUCGCgCGCCUG-GGCg -5'
29526 3' -60.8 NC_006151.1 + 109101 0.67 0.637619
Target:  5'- gAGGCccAG-UGAGGCGagcCGCcGGCCCGCg -3'
miRNA:   3'- gUCCG--UCgACUUCGC---GCGcCUGGGCG- -5'
29526 3' -60.8 NC_006151.1 + 69134 0.67 0.637619
Target:  5'- gCGGGCAG----GGCGCGCGGguGCUCGa -3'
miRNA:   3'- -GUCCGUCgacuUCGCGCGCC--UGGGCg -5'
29526 3' -60.8 NC_006151.1 + 51400 0.67 0.637619
Target:  5'- gGGGCgAGCgcgucGcAGCGCGUGcACCCGUc -3'
miRNA:   3'- gUCCG-UCGa----CuUCGCGCGCcUGGGCG- -5'
29526 3' -60.8 NC_006151.1 + 22271 0.67 0.637619
Target:  5'- gCGGGCGGgggGAAGgucgGCGCGGGCaCgGCg -3'
miRNA:   3'- -GUCCGUCga-CUUCg---CGCGCCUG-GgCG- -5'
29526 3' -60.8 NC_006151.1 + 114684 0.67 0.637619
Target:  5'- aAGGCcucguGCUcGAAGgGCGCGucCCCGg -3'
miRNA:   3'- gUCCGu----CGA-CUUCgCGCGCcuGGGCg -5'
29526 3' -60.8 NC_006151.1 + 38555 0.67 0.63662
Target:  5'- -cGaGCGGCgcaagaaGAAGCGcCGCgcgcccgGGGCCCGCc -3'
miRNA:   3'- guC-CGUCGa------CUUCGC-GCG-------CCUGGGCG- -5'
29526 3' -60.8 NC_006151.1 + 135144 0.67 0.63562
Target:  5'- aCGGGCAGacccagcccGGCGgGCGcGGCCCGg -3'
miRNA:   3'- -GUCCGUCgacu-----UCGCgCGC-CUGGGCg -5'
29526 3' -60.8 NC_006151.1 + 82659 0.67 0.634621
Target:  5'- aGGGCGGCccacccUGcGGCGCGCcgcGGGcgagggcggcggccCCCGCg -3'
miRNA:   3'- gUCCGUCG------ACuUCGCGCG---CCU--------------GGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.