miRNA display CGI


Results 21 - 40 of 381 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29526 3' -60.8 NC_006151.1 + 77079 0.76 0.193631
Target:  5'- gAGGCucaccacgugcgAGCUGAAGCGCgggcgcgGCGGGCgCGCg -3'
miRNA:   3'- gUCCG------------UCGACUUCGCG-------CGCCUGgGCG- -5'
29526 3' -60.8 NC_006151.1 + 93668 0.76 0.189429
Target:  5'- gCAGGaGGCUGucGCGCGgGGcgcgcGCCCGCa -3'
miRNA:   3'- -GUCCgUCGACuuCGCGCgCC-----UGGGCG- -5'
29526 3' -60.8 NC_006151.1 + 120319 0.75 0.235231
Target:  5'- uCGGGCAGCcucucgGAcGcCGCGCGcGCCCGCg -3'
miRNA:   3'- -GUCCGUCGa-----CUuC-GCGCGCcUGGGCG- -5'
29526 3' -60.8 NC_006151.1 + 68523 0.75 0.235231
Target:  5'- cCGGGCAGCaccaccAGCGCGCgcaGGuCCCGCg -3'
miRNA:   3'- -GUCCGUCGacu---UCGCGCG---CCuGGGCG- -5'
29526 3' -60.8 NC_006151.1 + 35178 0.75 0.24029
Target:  5'- cCGGGCAuGCaaaucaGAGGCGCGCGGGagacgccUCCGCg -3'
miRNA:   3'- -GUCCGU-CGa-----CUUCGCGCGCCU-------GGGCG- -5'
29526 3' -60.8 NC_006151.1 + 58210 0.75 0.21901
Target:  5'- cCAGGCAGUcGAAGcCGCGCGGgacgagcacgcGCgCCGCc -3'
miRNA:   3'- -GUCCGUCGaCUUC-GCGCGCC-----------UG-GGCG- -5'
29526 3' -60.8 NC_006151.1 + 8005 0.75 0.229715
Target:  5'- gCGGGCGGgaGggG-GCGCGaGACCgGCu -3'
miRNA:   3'- -GUCCGUCgaCuuCgCGCGC-CUGGgCG- -5'
29526 3' -60.8 NC_006151.1 + 122949 0.75 0.229715
Target:  5'- -cGGCGGCgccgcGggGgGCGCGGACgCCGg -3'
miRNA:   3'- guCCGUCGa----CuuCgCGCGCCUG-GGCg -5'
29526 3' -60.8 NC_006151.1 + 95292 0.75 0.229715
Target:  5'- -cGGCGGC-GAcGCGCGCGG-CCCGg -3'
miRNA:   3'- guCCGUCGaCUuCGCGCGCCuGGGCg -5'
29526 3' -60.8 NC_006151.1 + 4215 0.75 0.235231
Target:  5'- aGGGCGGCcGggGCGCggGCGGGCgCGg -3'
miRNA:   3'- gUCCGUCGaCuuCGCG--CGCCUGgGCg -5'
29526 3' -60.8 NC_006151.1 + 23032 0.75 0.21901
Target:  5'- gAGGCGGCgaaGAAGCGgGCGG--CCGCg -3'
miRNA:   3'- gUCCGUCGa--CUUCGCgCGCCugGGCG- -5'
29526 3' -60.8 NC_006151.1 + 84425 0.75 0.208735
Target:  5'- aAGGCGGCgcgcgGcGGCGCGCGGcccaugucccCCCGCg -3'
miRNA:   3'- gUCCGUCGa----CuUCGCGCGCCu---------GGGCG- -5'
29526 3' -60.8 NC_006151.1 + 59292 0.75 0.240858
Target:  5'- gAGcGCGGCgu-GGCGCccgcggcucaGCGGGCCCGCg -3'
miRNA:   3'- gUC-CGUCGacuUCGCG----------CGCCUGGGCG- -5'
29526 3' -60.8 NC_006151.1 + 70096 0.75 0.240858
Target:  5'- uGGGCGGC-GAAGgGCGCGaGcggguccacGCCCGCg -3'
miRNA:   3'- gUCCGUCGaCUUCgCGCGC-C---------UGGGCG- -5'
29526 3' -60.8 NC_006151.1 + 122492 0.74 0.264493
Target:  5'- gCGGGCgagacGGCgcgccGGCGCGCGGACgCGCu -3'
miRNA:   3'- -GUCCG-----UCGacu--UCGCGCGCCUGgGCG- -5'
29526 3' -60.8 NC_006151.1 + 102394 0.74 0.264493
Target:  5'- -uGGC-GCUGGucgcGGCGCGCGucgcgcGGCCCGCg -3'
miRNA:   3'- guCCGuCGACU----UCGCGCGC------CUGGGCG- -5'
29526 3' -60.8 NC_006151.1 + 129226 0.74 0.258413
Target:  5'- gCAGGCAGCUGgcGCGgGUGcGCCCc- -3'
miRNA:   3'- -GUCCGUCGACuuCGCgCGCcUGGGcg -5'
29526 3' -60.8 NC_006151.1 + 104387 0.74 0.268817
Target:  5'- --cGCGGCUGGcccgcaucgccggcGGCGUGCuGGCCCGCg -3'
miRNA:   3'- gucCGUCGACU--------------UCGCGCGcCUGGGCG- -5'
29526 3' -60.8 NC_006151.1 + 3922 0.74 0.26388
Target:  5'- uCGGGCcagAGCgGggGCaggccggGCGCGGGCuCCGCg -3'
miRNA:   3'- -GUCCG---UCGaCuuCG-------CGCGCCUG-GGCG- -5'
29526 3' -60.8 NC_006151.1 + 78816 0.74 0.244863
Target:  5'- gGGGCccaguaccuguuucAGCUGuuuGGGCGCGCcuGACCCGCg -3'
miRNA:   3'- gUCCG--------------UCGAC---UUCGCGCGc-CUGGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.