miRNA display CGI


Results 61 - 80 of 381 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29526 3' -60.8 NC_006151.1 + 141698 0.73 0.289975
Target:  5'- -cGGCGGCUGGcGGCGgaCGCGGuGCCCGg -3'
miRNA:   3'- guCCGUCGACU-UCGC--GCGCC-UGGGCg -5'
29526 3' -60.8 NC_006151.1 + 82413 0.73 0.289975
Target:  5'- aGGGCGGCcccgaGAGGCGCGgGcGCUCGCg -3'
miRNA:   3'- gUCCGUCGa----CUUCGCGCgCcUGGGCG- -5'
29526 3' -60.8 NC_006151.1 + 106496 0.73 0.303421
Target:  5'- aCGGGCcagcGGCUGgcGCGCGCcgugccGGGCgCGCu -3'
miRNA:   3'- -GUCCG----UCGACuuCGCGCG------CCUGgGCG- -5'
29526 3' -60.8 NC_006151.1 + 16976 0.73 0.303421
Target:  5'- cCGGcGUGGCgccaGGAGCGguUGUGGACCCGCg -3'
miRNA:   3'- -GUC-CGUCGa---CUUCGC--GCGCCUGGGCG- -5'
29526 3' -60.8 NC_006151.1 + 57981 0.72 0.339114
Target:  5'- uGGGCGGC-GAGcGCGcCGCGGACC-GCc -3'
miRNA:   3'- gUCCGUCGaCUU-CGC-GCGCCUGGgCG- -5'
29526 3' -60.8 NC_006151.1 + 49322 0.72 0.35962
Target:  5'- gGGGCgcccacgcucaaaaGGCcu--GCGCGcCGGACCCGCg -3'
miRNA:   3'- gUCCG--------------UCGacuuCGCGC-GCCUGGGCG- -5'
29526 3' -60.8 NC_006151.1 + 127296 0.72 0.324481
Target:  5'- gGGGguGCUGGuacaGGCcgucguccGCGCGGGUCCGCg -3'
miRNA:   3'- gUCCguCGACU----UCG--------CGCGCCUGGGCG- -5'
29526 3' -60.8 NC_006151.1 + 136651 0.72 0.339114
Target:  5'- gGGGC-GCUcgccccucggGGAGCGCGCGGcCgCCGCc -3'
miRNA:   3'- gUCCGuCGA----------CUUCGCGCGCCuG-GGCG- -5'
29526 3' -60.8 NC_006151.1 + 82736 0.72 0.339114
Target:  5'- aGGcGCAGCggGAGGCGCaCGGACgaCGCg -3'
miRNA:   3'- gUC-CGUCGa-CUUCGCGcGCCUGg-GCG- -5'
29526 3' -60.8 NC_006151.1 + 49041 0.72 0.361951
Target:  5'- cCAGGCccacgGGCUGGccuucagcguccGGCGCGgGGugCCGa -3'
miRNA:   3'- -GUCCG-----UCGACU------------UCGCGCgCCugGGCg -5'
29526 3' -60.8 NC_006151.1 + 137786 0.72 0.342098
Target:  5'- gCAGGCcgugcuGCUGGAGCGgGacuucaucgagcccaUGGGCCCGUa -3'
miRNA:   3'- -GUCCGu-----CGACUUCGCgC---------------GCCUGGGCG- -5'
29526 3' -60.8 NC_006151.1 + 4037 0.72 0.331738
Target:  5'- cCAGGCGGCcucgcGgGCGCGGGcCCCGUc -3'
miRNA:   3'- -GUCCGUCGacuu-CgCGCGCCU-GGGCG- -5'
29526 3' -60.8 NC_006151.1 + 103269 0.72 0.323761
Target:  5'- uGGGCGgccacguGCUGAGccaggagacGCGCGCGcGGCUCGCg -3'
miRNA:   3'- gUCCGU-------CGACUU---------CGCGCGC-CUGGGCG- -5'
29526 3' -60.8 NC_006151.1 + 17939 0.72 0.339114
Target:  5'- uCAGGCAGCgGcGGCGUcucCGGcGCCCGCc -3'
miRNA:   3'- -GUCCGUCGaCuUCGCGc--GCC-UGGGCG- -5'
29526 3' -60.8 NC_006151.1 + 66480 0.72 0.336889
Target:  5'- -cGGCAcGCUGcacaacugcugcgaGAGCGCGCGGAUcuUCGCc -3'
miRNA:   3'- guCCGU-CGAC--------------UUCGCGCGCCUG--GGCG- -5'
29526 3' -60.8 NC_006151.1 + 57936 0.72 0.361951
Target:  5'- aAGGC-GCgGAAGCcgaGCGCGGGCCacaGCc -3'
miRNA:   3'- gUCCGuCGaCUUCG---CGCGCCUGGg--CG- -5'
29526 3' -60.8 NC_006151.1 + 58416 0.72 0.346609
Target:  5'- --cGCAGCUG-GGCGUGCGGcaGCCaCGCc -3'
miRNA:   3'- gucCGUCGACuUCGCGCGCC--UGG-GCG- -5'
29526 3' -60.8 NC_006151.1 + 67485 0.72 0.331738
Target:  5'- gCGGGCAcccGCacacGAGCGCGCGG-CUCGCg -3'
miRNA:   3'- -GUCCGU---CGac--UUCGCGCGCCuGGGCG- -5'
29526 3' -60.8 NC_006151.1 + 51202 0.72 0.339114
Target:  5'- aGGGUGGCcagcagGccGCcCGCGGGCCCGCg -3'
miRNA:   3'- gUCCGUCGa-----CuuCGcGCGCCUGGGCG- -5'
29526 3' -60.8 NC_006151.1 + 99986 0.72 0.331738
Target:  5'- -uGGCGGCgcuGGCGCGCgaGGACCUGa -3'
miRNA:   3'- guCCGUCGacuUCGCGCG--CCUGGGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.