miRNA display CGI


Results 81 - 100 of 381 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29526 3' -60.8 NC_006151.1 + 49041 0.72 0.361951
Target:  5'- cCAGGCccacgGGCUGGccuucagcguccGGCGCGgGGugCCGa -3'
miRNA:   3'- -GUCCG-----UCGACU------------UCGCGCgCCugGGCg -5'
29526 3' -60.8 NC_006151.1 + 57936 0.72 0.361951
Target:  5'- aAGGC-GCgGAAGCcgaGCGCGGGCCacaGCc -3'
miRNA:   3'- gUCCGuCGaCUUCG---CGCGCCUGGg--CG- -5'
29526 3' -60.8 NC_006151.1 + 137786 0.72 0.342098
Target:  5'- gCAGGCcgugcuGCUGGAGCGgGacuucaucgagcccaUGGGCCCGUa -3'
miRNA:   3'- -GUCCGu-----CGACUUCGCgC---------------GCCUGGGCG- -5'
29526 3' -60.8 NC_006151.1 + 57981 0.72 0.339114
Target:  5'- uGGGCGGC-GAGcGCGcCGCGGACC-GCc -3'
miRNA:   3'- gUCCGUCGaCUU-CGC-GCGCCUGGgCG- -5'
29526 3' -60.8 NC_006151.1 + 83186 0.71 0.402325
Target:  5'- gCGGGCGGCaGAgcucguugAGCGCGaGGcaguCCCGCg -3'
miRNA:   3'- -GUCCGUCGaCU--------UCGCGCgCCu---GGGCG- -5'
29526 3' -60.8 NC_006151.1 + 4240 0.71 0.375358
Target:  5'- nGGGCAGCcGGAGCgggcagggcagcagGCGCucgaGGACgCCGCg -3'
miRNA:   3'- gUCCGUCGaCUUCG--------------CGCG----CCUG-GGCG- -5'
29526 3' -60.8 NC_006151.1 + 53793 0.71 0.369797
Target:  5'- uGGGCGGC-GAcGCGCGuCGaGCCCGUg -3'
miRNA:   3'- gUCCGUCGaCUuCGCGC-GCcUGGGCG- -5'
29526 3' -60.8 NC_006151.1 + 137539 0.71 0.410736
Target:  5'- uGGGCGGaCUGGGacGCGgGCGucCCCGCc -3'
miRNA:   3'- gUCCGUC-GACUU--CGCgCGCcuGGGCG- -5'
29526 3' -60.8 NC_006151.1 + 96056 0.71 0.410736
Target:  5'- gCAGGUagcAGCUGGcgagcgagccGCGCGCGcGGCCgGCg -3'
miRNA:   3'- -GUCCG---UCGACUu---------CGCGCGC-CUGGgCG- -5'
29526 3' -60.8 NC_006151.1 + 9624 0.71 0.369797
Target:  5'- -cGGCGGCgagggggGAAGCgggagggagagGCGCGGcgcCCCGCg -3'
miRNA:   3'- guCCGUCGa------CUUCG-----------CGCGCCu--GGGCG- -5'
29526 3' -60.8 NC_006151.1 + 115918 0.71 0.402325
Target:  5'- aAGGC-GCUGAAcucguccuCGCGCaGGCCCGCc -3'
miRNA:   3'- gUCCGuCGACUUc-------GCGCGcCUGGGCG- -5'
29526 3' -60.8 NC_006151.1 + 71987 0.71 0.402325
Target:  5'- gGGGCAGCUGGuAGCGC-CGG-CCguUGCu -3'
miRNA:   3'- gUCCGUCGACU-UCGCGcGCCuGG--GCG- -5'
29526 3' -60.8 NC_006151.1 + 115163 0.71 0.406517
Target:  5'- aAGGCGGCgaagccgcgcggcagGggGCGCuccagccagcgcgccGCGGGCgCGCg -3'
miRNA:   3'- gUCCGUCGa--------------CuuCGCG---------------CGCCUGgGCG- -5'
29526 3' -60.8 NC_006151.1 + 3240 0.71 0.377759
Target:  5'- cCAGGCGGCgcgGcGGCGgaGCgGGGCgCCGCg -3'
miRNA:   3'- -GUCCGUCGa--CuUCGCg-CG-CCUG-GGCG- -5'
29526 3' -60.8 NC_006151.1 + 76985 0.71 0.377759
Target:  5'- cCAGcGCGGUgaGGAGCGcCGCGaggguGGCCCGCg -3'
miRNA:   3'- -GUC-CGUCGa-CUUCGC-GCGC-----CUGGGCG- -5'
29526 3' -60.8 NC_006151.1 + 129811 0.71 0.376957
Target:  5'- gAGGCccgugAGCgcGGAGCGCGCGGcggcguaGCCCaGCg -3'
miRNA:   3'- gUCCG-----UCGa-CUUCGCGCGCC-------UGGG-CG- -5'
29526 3' -60.8 NC_006151.1 + 69816 0.71 0.369797
Target:  5'- cCAGGCGcucgccguccacGUUGuagcGCGUGCGGGCCgGCa -3'
miRNA:   3'- -GUCCGU------------CGACuu--CGCGCGCCUGGgCG- -5'
29526 3' -60.8 NC_006151.1 + 31718 0.71 0.410736
Target:  5'- cCGGGCGGaacGggGCGUGgagaGGcGCCCGCg -3'
miRNA:   3'- -GUCCGUCga-CuuCGCGCg---CC-UGGGCG- -5'
29526 3' -60.8 NC_006151.1 + 88914 0.71 0.367431
Target:  5'- uCGGGCgAGCgGAAGCGCccgcggcgguagaaGCGGACCuCGa -3'
miRNA:   3'- -GUCCG-UCGaCUUCGCG--------------CGCCUGG-GCg -5'
29526 3' -60.8 NC_006151.1 + 24518 0.71 0.369007
Target:  5'- uGGGCGccgccacGUUGcAGCGCGCGGcCCCGa -3'
miRNA:   3'- gUCCGU-------CGACuUCGCGCGCCuGGGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.