miRNA display CGI


Results 101 - 120 of 381 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29526 3' -60.8 NC_006151.1 + 95734 0.71 0.3932
Target:  5'- gAGGCAGCUGAAGauguuguCGCaGCGGAggcuCUCGUc -3'
miRNA:   3'- gUCCGUCGACUUC-------GCG-CGCCU----GGGCG- -5'
29526 3' -60.8 NC_006151.1 + 7047 0.71 0.3932
Target:  5'- cCGGGCcaaUG-GGCGCGCGGAggcgucuCCCGCg -3'
miRNA:   3'- -GUCCGucgACuUCGCGCGCCU-------GGGCG- -5'
29526 3' -60.8 NC_006151.1 + 134789 0.71 0.394024
Target:  5'- aCGGGCcugUGAGGC-CGCGGcgGCCCGCg -3'
miRNA:   3'- -GUCCGucgACUUCGcGCGCC--UGGGCG- -5'
29526 3' -60.8 NC_006151.1 + 134754 0.71 0.394024
Target:  5'- -cGaGCAGC----GCGCGCgGGGCCCGCg -3'
miRNA:   3'- guC-CGUCGacuuCGCGCG-CCUGGGCG- -5'
29526 3' -60.8 NC_006151.1 + 133441 0.71 0.394024
Target:  5'- -uGGCGGCcGAGGCGCucuuggccccgGuCGaGGCCCGCg -3'
miRNA:   3'- guCCGUCGaCUUCGCG-----------C-GC-CUGGGCG- -5'
29526 3' -60.8 NC_006151.1 + 18159 0.71 0.398991
Target:  5'- gGGGCGGCggcgggcaugucgGAAuGCGgGCGGGCCgGUu -3'
miRNA:   3'- gUCCGUCGa------------CUU-CGCgCGCCUGGgCG- -5'
29526 3' -60.8 NC_006151.1 + 71987 0.71 0.402325
Target:  5'- gGGGCAGCUGGuAGCGC-CGG-CCguUGCu -3'
miRNA:   3'- gUCCGUCGACU-UCGCGcGCCuGG--GCG- -5'
29526 3' -60.8 NC_006151.1 + 115918 0.71 0.402325
Target:  5'- aAGGC-GCUGAAcucguccuCGCGCaGGCCCGCc -3'
miRNA:   3'- gUCCGuCGACUUc-------GCGCGcCUGGGCG- -5'
29526 3' -60.8 NC_006151.1 + 83186 0.71 0.402325
Target:  5'- gCGGGCGGCaGAgcucguugAGCGCGaGGcaguCCCGCg -3'
miRNA:   3'- -GUCCGUCGaCU--------UCGCGCgCCu---GGGCG- -5'
29526 3' -60.8 NC_006151.1 + 115163 0.71 0.406517
Target:  5'- aAGGCGGCgaagccgcgcggcagGggGCGCuccagccagcgcgccGCGGGCgCGCg -3'
miRNA:   3'- gUCCGUCGa--------------CuuCGCG---------------CGCCUGgGCG- -5'
29526 3' -60.8 NC_006151.1 + 141460 0.71 0.410736
Target:  5'- aGGGCGGuCUGGAGC-CGgGGGCgCCGa -3'
miRNA:   3'- gUCCGUC-GACUUCGcGCgCCUG-GGCg -5'
29526 3' -60.8 NC_006151.1 + 137539 0.71 0.410736
Target:  5'- uGGGCGGaCUGGGacGCGgGCGucCCCGCc -3'
miRNA:   3'- gUCCGUC-GACUU--CGCgCGCcuGGGCG- -5'
29526 3' -60.8 NC_006151.1 + 96056 0.71 0.410736
Target:  5'- gCAGGUagcAGCUGGcgagcgagccGCGCGCGcGGCCgGCg -3'
miRNA:   3'- -GUCCG---UCGACUu---------CGCGCGC-CUGGgCG- -5'
29526 3' -60.8 NC_006151.1 + 31718 0.71 0.410736
Target:  5'- cCGGGCGGaacGggGCGUGgagaGGcGCCCGCg -3'
miRNA:   3'- -GUCCGUCga-CuuCGCGCg---CC-UGGGCG- -5'
29526 3' -60.8 NC_006151.1 + 132803 0.7 0.418399
Target:  5'- gAGGC-GCUGGuacAGCGCGUccGGgcuggccGCCCGCg -3'
miRNA:   3'- gUCCGuCGACU---UCGCGCG--CC-------UGGGCG- -5'
29526 3' -60.8 NC_006151.1 + 130289 0.7 0.425283
Target:  5'- gCGGGCgcgcgccggccgacGGCgcGGAGCGCGCGcGCCgCGCg -3'
miRNA:   3'- -GUCCG--------------UCGa-CUUCGCGCGCcUGG-GCG- -5'
29526 3' -60.8 NC_006151.1 + 96997 0.7 0.427882
Target:  5'- aGGGuCAGCggggGGAcacGCGCGCGuGuGCCCGCc -3'
miRNA:   3'- gUCC-GUCGa---CUU---CGCGCGC-C-UGGGCG- -5'
29526 3' -60.8 NC_006151.1 + 90411 0.7 0.427882
Target:  5'- gCAGGCGGCgaGGAGCGCGaCGaGCaCGCc -3'
miRNA:   3'- -GUCCGUCGa-CUUCGCGC-GCcUGgGCG- -5'
29526 3' -60.8 NC_006151.1 + 32583 0.7 0.427882
Target:  5'- cCGGGCggagggggaAGCgggaagggGAAGCGCG-GGGCgCCGCg -3'
miRNA:   3'- -GUCCG---------UCGa-------CUUCGCGCgCCUG-GGCG- -5'
29526 3' -60.8 NC_006151.1 + 113607 0.7 0.427882
Target:  5'- --cGUGGCcG-AGCGCcagGCGGACCCGCg -3'
miRNA:   3'- gucCGUCGaCuUCGCG---CGCCUGGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.