miRNA display CGI


Results 61 - 80 of 381 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29526 3' -60.8 NC_006151.1 + 123736 0.66 0.657585
Target:  5'- gAGGCGucaugcccGCUGuGGCggucuuugGCGCGGGCCC-Cg -3'
miRNA:   3'- gUCCGU--------CGACuUCG--------CGCGCCUGGGcG- -5'
29526 3' -60.8 NC_006151.1 + 29592 0.66 0.656588
Target:  5'- -cGGCGGCUGcGGCcgcggcgGCGgGGGCUgGUg -3'
miRNA:   3'- guCCGUCGACuUCG-------CGCgCCUGGgCG- -5'
29526 3' -60.8 NC_006151.1 + 69305 0.66 0.647607
Target:  5'- aCGGGCcgccGGCgccacacGUGCGCGGgcgcgucgccGCCCGCg -3'
miRNA:   3'- -GUCCG----UCGacuu---CGCGCGCC----------UGGGCG- -5'
29526 3' -60.8 NC_006151.1 + 19898 0.66 0.647607
Target:  5'- --aGCAGCgccaGGAGCuGCGCGG-CgCGCa -3'
miRNA:   3'- gucCGUCGa---CUUCG-CGCGCCuGgGCG- -5'
29526 3' -60.8 NC_006151.1 + 70812 0.66 0.647607
Target:  5'- uGGGCAGCUaccGGCGCaGCuGGAUCgUGCu -3'
miRNA:   3'- gUCCGUCGAcu-UCGCG-CG-CCUGG-GCG- -5'
29526 3' -60.8 NC_006151.1 + 4705 0.66 0.647607
Target:  5'- -cGGCGGCcccgcuguagaUGAGGCGCacgaGGGCCuCGUg -3'
miRNA:   3'- guCCGUCG-----------ACUUCGCGcg--CCUGG-GCG- -5'
29526 3' -60.8 NC_006151.1 + 11890 0.66 0.647607
Target:  5'- uCGGGCcGCaucGAGGCGCGuCGGGguuUUCGCg -3'
miRNA:   3'- -GUCCGuCGa--CUUCGCGC-GCCU---GGGCG- -5'
29526 3' -60.8 NC_006151.1 + 84396 0.66 0.647607
Target:  5'- aCGGGCGG--GGAGCGgGUGGGCgCGg -3'
miRNA:   3'- -GUCCGUCgaCUUCGCgCGCCUGgGCg -5'
29526 3' -60.8 NC_006151.1 + 86145 0.66 0.647607
Target:  5'- aGGGaCGGCggGGAGCucGCGCuGACgCGCg -3'
miRNA:   3'- gUCC-GUCGa-CUUCG--CGCGcCUGgGCG- -5'
29526 3' -60.8 NC_006151.1 + 104271 0.66 0.647607
Target:  5'- -cGGC-GC---GGCG-GCGGGCCCGCc -3'
miRNA:   3'- guCCGuCGacuUCGCgCGCCUGGGCG- -5'
29526 3' -60.8 NC_006151.1 + 132148 0.66 0.647607
Target:  5'- -cGGUGGUUGAcggcgcgcAGCuGCGCGG-CCgGCa -3'
miRNA:   3'- guCCGUCGACU--------UCG-CGCGCCuGGgCG- -5'
29526 3' -60.8 NC_006151.1 + 8299 0.66 0.647607
Target:  5'- gCGGGCGccgcgucccGCcccgagcccccGggGCGCGCGGGCCucgauCGCg -3'
miRNA:   3'- -GUCCGU---------CGa----------CuuCGCGCGCCUGG-----GCG- -5'
29526 3' -60.8 NC_006151.1 + 29043 0.66 0.647607
Target:  5'- -uGGCAGCgugccaaGAcucgaguuggcGGCGcCGCGGGCCC-Cg -3'
miRNA:   3'- guCCGUCGa------CU-----------UCGC-GCGCCUGGGcG- -5'
29526 3' -60.8 NC_006151.1 + 111113 0.66 0.643613
Target:  5'- -uGGCucGGCggGGAGCGCGCGucugugcgcgccCCCGCg -3'
miRNA:   3'- guCCG--UCGa-CUUCGCGCGCcu----------GGGCG- -5'
29526 3' -60.8 NC_006151.1 + 107006 0.67 0.641615
Target:  5'- --cGCAGCUGGAGCGgcucucggcgcugauCGCGGcgcggccccugGCCgGCg -3'
miRNA:   3'- gucCGUCGACUUCGC---------------GCGCC-----------UGGgCG- -5'
29526 3' -60.8 NC_006151.1 + 118431 0.67 0.637619
Target:  5'- aCGGGCGcGgaGGuguGCGCGCGGcucgGCCUGg -3'
miRNA:   3'- -GUCCGU-CgaCUu--CGCGCGCC----UGGGCg -5'
29526 3' -60.8 NC_006151.1 + 122450 0.67 0.637619
Target:  5'- gAGGCGGCguccacgGcGGCG-GCGGGCgCCGa -3'
miRNA:   3'- gUCCGUCGa------CuUCGCgCGCCUG-GGCg -5'
29526 3' -60.8 NC_006151.1 + 109101 0.67 0.637619
Target:  5'- gAGGCccAG-UGAGGCGagcCGCcGGCCCGCg -3'
miRNA:   3'- gUCCG--UCgACUUCGC---GCGcCUGGGCG- -5'
29526 3' -60.8 NC_006151.1 + 69134 0.67 0.637619
Target:  5'- gCGGGCAG----GGCGCGCGGguGCUCGa -3'
miRNA:   3'- -GUCCGUCgacuUCGCGCGCC--UGGGCg -5'
29526 3' -60.8 NC_006151.1 + 51400 0.67 0.637619
Target:  5'- gGGGCgAGCgcgucGcAGCGCGUGcACCCGUc -3'
miRNA:   3'- gUCCG-UCGa----CuUCGCGCGCcUGGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.