Results 81 - 100 of 381 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29526 | 3' | -60.8 | NC_006151.1 | + | 109101 | 0.67 | 0.637619 |
Target: 5'- gAGGCccAG-UGAGGCGagcCGCcGGCCCGCg -3' miRNA: 3'- gUCCG--UCgACUUCGC---GCGcCUGGGCG- -5' |
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29526 | 3' | -60.8 | NC_006151.1 | + | 122450 | 0.67 | 0.637619 |
Target: 5'- gAGGCGGCguccacgGcGGCG-GCGGGCgCCGa -3' miRNA: 3'- gUCCGUCGa------CuUCGCgCGCCUG-GGCg -5' |
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29526 | 3' | -60.8 | NC_006151.1 | + | 118431 | 0.67 | 0.637619 |
Target: 5'- aCGGGCGcGgaGGuguGCGCGCGGcucgGCCUGg -3' miRNA: 3'- -GUCCGU-CgaCUu--CGCGCGCC----UGGGCg -5' |
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29526 | 3' | -60.8 | NC_006151.1 | + | 38555 | 0.67 | 0.63662 |
Target: 5'- -cGaGCGGCgcaagaaGAAGCGcCGCgcgcccgGGGCCCGCc -3' miRNA: 3'- guC-CGUCGa------CUUCGC-GCG-------CCUGGGCG- -5' |
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29526 | 3' | -60.8 | NC_006151.1 | + | 135144 | 0.67 | 0.63562 |
Target: 5'- aCGGGCAGacccagcccGGCGgGCGcGGCCCGg -3' miRNA: 3'- -GUCCGUCgacu-----UCGCgCGC-CUGGGCg -5' |
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29526 | 3' | -60.8 | NC_006151.1 | + | 82659 | 0.67 | 0.634621 |
Target: 5'- aGGGCGGCccacccUGcGGCGCGCcgcGGGcgagggcggcggccCCCGCg -3' miRNA: 3'- gUCCGUCG------ACuUCGCGCG---CCU--------------GGGCG- -5' |
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29526 | 3' | -60.8 | NC_006151.1 | + | 39917 | 0.67 | 0.627626 |
Target: 5'- gCGGGCuGCUGGAGCcCGacgccgaGGccgcCCCGCu -3' miRNA: 3'- -GUCCGuCGACUUCGcGCg------CCu---GGGCG- -5' |
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29526 | 3' | -60.8 | NC_006151.1 | + | 108677 | 0.67 | 0.627626 |
Target: 5'- --aGCAGCcGGAGCG-GCGG-CCCGa -3' miRNA: 3'- gucCGUCGaCUUCGCgCGCCuGGGCg -5' |
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29526 | 3' | -60.8 | NC_006151.1 | + | 98368 | 0.67 | 0.627626 |
Target: 5'- gCGGGCu-CUGGGcGCGCGCGcugcgccuGGCCUGCc -3' miRNA: 3'- -GUCCGucGACUU-CGCGCGC--------CUGGGCG- -5' |
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29526 | 3' | -60.8 | NC_006151.1 | + | 8107 | 0.67 | 0.627626 |
Target: 5'- gGGGgAGggGggGggucggaGCGCGGAcCCCGCc -3' miRNA: 3'- gUCCgUCgaCuuCg------CGCGCCU-GGGCG- -5' |
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29526 | 3' | -60.8 | NC_006151.1 | + | 50372 | 0.67 | 0.627626 |
Target: 5'- -cGcCGGCgGggGCGagaCGCGGGcCCCGCg -3' miRNA: 3'- guCcGUCGaCuuCGC---GCGCCU-GGGCG- -5' |
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29526 | 3' | -60.8 | NC_006151.1 | + | 61134 | 0.67 | 0.627626 |
Target: 5'- cCAGGguGCgggUGAAGCuGCGUcggcaggacaGGACCagCGCg -3' miRNA: 3'- -GUCCguCG---ACUUCG-CGCG----------CCUGG--GCG- -5' |
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29526 | 3' | -60.8 | NC_006151.1 | + | 99015 | 0.67 | 0.627626 |
Target: 5'- -cGGCcGUcGAGGUGCGCGucUCCGCg -3' miRNA: 3'- guCCGuCGaCUUCGCGCGCcuGGGCG- -5' |
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29526 | 3' | -60.8 | NC_006151.1 | + | 131912 | 0.67 | 0.627626 |
Target: 5'- gGGGCGGCaGcaGGGCcucCGCGGugCUGCc -3' miRNA: 3'- gUCCGUCGaC--UUCGc--GCGCCugGGCG- -5' |
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29526 | 3' | -60.8 | NC_006151.1 | + | 32790 | 0.67 | 0.617637 |
Target: 5'- gCGGGgGGCcGAAGCGgaCGCGGAagaagaCGCg -3' miRNA: 3'- -GUCCgUCGaCUUCGC--GCGCCUgg----GCG- -5' |
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29526 | 3' | -60.8 | NC_006151.1 | + | 40552 | 0.67 | 0.617637 |
Target: 5'- -cGGCGGUggugGAAGCG-GCGGcggcGgCCGCg -3' miRNA: 3'- guCCGUCGa---CUUCGCgCGCC----UgGGCG- -5' |
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29526 | 3' | -60.8 | NC_006151.1 | + | 47637 | 0.67 | 0.617637 |
Target: 5'- -uGGCGGC---GGCGCGCGGuaCUGCa -3' miRNA: 3'- guCCGUCGacuUCGCGCGCCugGGCG- -5' |
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29526 | 3' | -60.8 | NC_006151.1 | + | 49668 | 0.67 | 0.617637 |
Target: 5'- cCGGGCcGCgcccgGAGGa-CGCGGACgCGCc -3' miRNA: 3'- -GUCCGuCGa----CUUCgcGCGCCUGgGCG- -5' |
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29526 | 3' | -60.8 | NC_006151.1 | + | 68033 | 0.67 | 0.617637 |
Target: 5'- cCAGGCGGCccgccGGCGCGgCGGGCaCGg -3' miRNA: 3'- -GUCCGUCGacu--UCGCGC-GCCUGgGCg -5' |
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29526 | 3' | -60.8 | NC_006151.1 | + | 100759 | 0.67 | 0.617637 |
Target: 5'- gAGG-AGCUgcgcGAGGC-CGCGGACCgCGUc -3' miRNA: 3'- gUCCgUCGA----CUUCGcGCGCCUGG-GCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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