miRNA display CGI


Results 101 - 120 of 381 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29526 3' -60.8 NC_006151.1 + 68033 0.67 0.617637
Target:  5'- cCAGGCGGCccgccGGCGCGgCGGGCaCGg -3'
miRNA:   3'- -GUCCGUCGacu--UCGCGC-GCCUGgGCg -5'
29526 3' -60.8 NC_006151.1 + 104911 0.67 0.617637
Target:  5'- -cGGCGGC---GGCGCGCGa--CCGCg -3'
miRNA:   3'- guCCGUCGacuUCGCGCGCcugGGCG- -5'
29526 3' -60.8 NC_006151.1 + 41504 0.67 0.616638
Target:  5'- aGGGgAGCcaaUGggGCGggcgcCGCGGagcggaagcccccGCCCGCg -3'
miRNA:   3'- gUCCgUCG---ACuuCGC-----GCGCC-------------UGGGCG- -5'
29526 3' -60.8 NC_006151.1 + 139618 0.67 0.611647
Target:  5'- cCGGGCgcGGCUGGgggccauccggcgccGGCGCgggggucgcgGCGGGCgCGCc -3'
miRNA:   3'- -GUCCG--UCGACU---------------UCGCG----------CGCCUGgGCG- -5'
29526 3' -60.8 NC_006151.1 + 3833 0.67 0.607657
Target:  5'- -uGGCggGGCUGGAGgGCcCGGAgCCGg -3'
miRNA:   3'- guCCG--UCGACUUCgCGcGCCUgGGCg -5'
29526 3' -60.8 NC_006151.1 + 121664 0.67 0.607657
Target:  5'- gCGGGCGGagggggGGAGCGaGCGGgccgACCCGg -3'
miRNA:   3'- -GUCCGUCga----CUUCGCgCGCC----UGGGCg -5'
29526 3' -60.8 NC_006151.1 + 135873 0.67 0.607657
Target:  5'- -uGGcCAGCguccGCGUGCGG-CCCGUg -3'
miRNA:   3'- guCC-GUCGacuuCGCGCGCCuGGGCG- -5'
29526 3' -60.8 NC_006151.1 + 5128 0.67 0.607657
Target:  5'- gCGGGCGagUGggGCGC-CGGGCCgGa -3'
miRNA:   3'- -GUCCGUcgACuuCGCGcGCCUGGgCg -5'
29526 3' -60.8 NC_006151.1 + 45620 0.67 0.607657
Target:  5'- gCGGGCGGaaGggG-GCGUGGAcgcCCCGg -3'
miRNA:   3'- -GUCCGUCgaCuuCgCGCGCCU---GGGCg -5'
29526 3' -60.8 NC_006151.1 + 55461 0.67 0.607657
Target:  5'- -cGGCcccGCcggGggGCGCGCGcccGGCgCCGCg -3'
miRNA:   3'- guCCGu--CGa--CuuCGCGCGC---CUG-GGCG- -5'
29526 3' -60.8 NC_006151.1 + 96373 0.67 0.607657
Target:  5'- aGGGCcGCcuccacgcGCGCGCGGugCCGg -3'
miRNA:   3'- gUCCGuCGacuu----CGCGCGCCugGGCg -5'
29526 3' -60.8 NC_006151.1 + 113108 0.67 0.607657
Target:  5'- gGGGCGGg-GccGCGgaCGCGGACgCCGCc -3'
miRNA:   3'- gUCCGUCgaCuuCGC--GCGCCUG-GGCG- -5'
29526 3' -60.8 NC_006151.1 + 135599 0.67 0.60666
Target:  5'- -cGGCGGCUcAuaagcccucccacGGC-CGCGGcGCCCGCa -3'
miRNA:   3'- guCCGUCGAcU-------------UCGcGCGCC-UGGGCG- -5'
29526 3' -60.8 NC_006151.1 + 64051 0.67 0.601678
Target:  5'- gCAGGUccAGC-GAGGCcccgaccaugccgguGCGCGGguccagcagcaGCCCGCa -3'
miRNA:   3'- -GUCCG--UCGaCUUCG---------------CGCGCC-----------UGGGCG- -5'
29526 3' -60.8 NC_006151.1 + 108304 0.67 0.601678
Target:  5'- -cGGCGGC-GAcccccacgccccccGCGCcCGGGCCCGCc -3'
miRNA:   3'- guCCGUCGaCUu-------------CGCGcGCCUGGGCG- -5'
29526 3' -60.8 NC_006151.1 + 122774 0.67 0.597696
Target:  5'- aCGGGCuGCucgUGGgcGGCuGCGCGGcCUCGCc -3'
miRNA:   3'- -GUCCGuCG---ACU--UCG-CGCGCCuGGGCG- -5'
29526 3' -60.8 NC_006151.1 + 94677 0.67 0.597696
Target:  5'- gCGGGCAGCUccccGAAGgcCGCGgccaCGGACCacugCGCg -3'
miRNA:   3'- -GUCCGUCGA----CUUC--GCGC----GCCUGG----GCG- -5'
29526 3' -60.8 NC_006151.1 + 89128 0.67 0.597696
Target:  5'- aGGGCGGCgggaccgGggGCGU-CGaGACCgCGCc -3'
miRNA:   3'- gUCCGUCGa------CuuCGCGcGC-CUGG-GCG- -5'
29526 3' -60.8 NC_006151.1 + 102271 0.67 0.597696
Target:  5'- uGGGCGcGCUGccGgaGCGCGG-CCCGg -3'
miRNA:   3'- gUCCGU-CGACuuCg-CGCGCCuGGGCg -5'
29526 3' -60.8 NC_006151.1 + 97471 0.67 0.597696
Target:  5'- gCAGGCGGCUcaccGCcaCGUGGACgCGCa -3'
miRNA:   3'- -GUCCGUCGAcuu-CGc-GCGCCUGgGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.