miRNA display CGI


Results 41 - 60 of 381 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29526 3' -60.8 NC_006151.1 + 17939 0.72 0.339114
Target:  5'- uCAGGCAGCgGcGGCGUcucCGGcGCCCGCc -3'
miRNA:   3'- -GUCCGUCGaCuUCGCGc--GCC-UGGGCG- -5'
29526 3' -60.8 NC_006151.1 + 18159 0.71 0.398991
Target:  5'- gGGGCGGCggcgggcaugucgGAAuGCGgGCGGGCCgGUu -3'
miRNA:   3'- gUCCGUCGa------------CUU-CGCgCGCCUGGgCG- -5'
29526 3' -60.8 NC_006151.1 + 18496 0.68 0.565029
Target:  5'- uGGGCAGgCUGGuguacaccggcgagAGCauGCGCGucCCCGCc -3'
miRNA:   3'- gUCCGUC-GACU--------------UCG--CGCGCcuGGGCG- -5'
29526 3' -60.8 NC_006151.1 + 19443 0.7 0.445443
Target:  5'- uGGGCGGCU----CGCGCuGGAgCCGCg -3'
miRNA:   3'- gUCCGUCGAcuucGCGCG-CCUgGGCG- -5'
29526 3' -60.8 NC_006151.1 + 19898 0.66 0.647607
Target:  5'- --aGCAGCgccaGGAGCuGCGCGG-CgCGCa -3'
miRNA:   3'- gucCGUCGa---CUUCG-CGCGCCuGgGCG- -5'
29526 3' -60.8 NC_006151.1 + 20139 0.69 0.471604
Target:  5'- gCGGGCGccGCggggGcGGCGCGUGGACcgccgggCCGCg -3'
miRNA:   3'- -GUCCGU--CGa---CuUCGCGCGCCUG-------GGCG- -5'
29526 3' -60.8 NC_006151.1 + 21085 0.68 0.528989
Target:  5'- aGGGCGGCgagGAGGagcccCGCGgGGAgCCGg -3'
miRNA:   3'- gUCCGUCGa--CUUC-----GCGCgCCUgGGCg -5'
29526 3' -60.8 NC_006151.1 + 21449 0.69 0.47252
Target:  5'- gGGGUGGCccccGGCgGCGUGGuCCCGCg -3'
miRNA:   3'- gUCCGUCGacu-UCG-CGCGCCuGGGCG- -5'
29526 3' -60.8 NC_006151.1 + 21490 0.76 0.180377
Target:  5'- gCAGGCGGCcGggGgGCGCGGGCgucaCCGg -3'
miRNA:   3'- -GUCCGUCGaCuuCgCGCGCCUG----GGCg -5'
29526 3' -60.8 NC_006151.1 + 22271 0.67 0.637619
Target:  5'- gCGGGCGGgggGAAGgucgGCGCGGGCaCgGCg -3'
miRNA:   3'- -GUCCGUCga-CUUCg---CGCGCCUG-GgCG- -5'
29526 3' -60.8 NC_006151.1 + 23032 0.75 0.21901
Target:  5'- gAGGCGGCgaaGAAGCGgGCGG--CCGCg -3'
miRNA:   3'- gUCCGUCGa--CUUCGCgCGCCugGGCG- -5'
29526 3' -60.8 NC_006151.1 + 23638 0.69 0.47252
Target:  5'- uCAGGguGUcGAugcGCGUGCGGguguacgaguACCCGCc -3'
miRNA:   3'- -GUCCguCGaCUu--CGCGCGCC----------UGGGCG- -5'
29526 3' -60.8 NC_006151.1 + 23890 0.7 0.454374
Target:  5'- gCGGGUucacgGGCUG-GGCGUcggucGCGGGCCCGa -3'
miRNA:   3'- -GUCCG-----UCGACuUCGCG-----CGCCUGGGCg -5'
29526 3' -60.8 NC_006151.1 + 24518 0.71 0.369007
Target:  5'- uGGGCGccgccacGUUGcAGCGCGCGGcCCCGa -3'
miRNA:   3'- gUCCGU-------CGACuUCGCGCGCCuGGGCg -5'
29526 3' -60.8 NC_006151.1 + 24710 0.69 0.476193
Target:  5'- uCAGGUAGCUGuacagaucgcaccgaAAGUGCGgcaGGACCagGCa -3'
miRNA:   3'- -GUCCGUCGAC---------------UUCGCGCg--CCUGGg-CG- -5'
29526 3' -60.8 NC_006151.1 + 26302 0.65 0.704084
Target:  5'- gGGGgGGgUGGggggaggaaagaacAGCGCGgGGcgagGCCCGCc -3'
miRNA:   3'- gUCCgUCgACU--------------UCGCGCgCC----UGGGCG- -5'
29526 3' -60.8 NC_006151.1 + 26360 0.7 0.427882
Target:  5'- gCGGGCcGCgucGggGCGCGCGucCCCcgGCg -3'
miRNA:   3'- -GUCCGuCGa--CuuCGCGCGCcuGGG--CG- -5'
29526 3' -60.8 NC_006151.1 + 27004 0.68 0.538653
Target:  5'- uCGGGCgagAGCUGGAGCa---GGGCCUGCc -3'
miRNA:   3'- -GUCCG---UCGACUUCGcgcgCCUGGGCG- -5'
29526 3' -60.8 NC_006151.1 + 27033 0.67 0.587758
Target:  5'- gCAGGgGGCcGAGGgGCGCuGGCgCGUg -3'
miRNA:   3'- -GUCCgUCGaCUUCgCGCGcCUGgGCG- -5'
29526 3' -60.8 NC_006151.1 + 27086 0.69 0.509859
Target:  5'- gGGcGCGGCgcaGGGCGCGCGuGucGCCCGUc -3'
miRNA:   3'- gUC-CGUCGac-UUCGCGCGC-C--UGGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.