miRNA display CGI


Results 61 - 80 of 381 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29526 3' -60.8 NC_006151.1 + 27196 0.66 0.667542
Target:  5'- gGGGCcGCgcaGAAgGCGcCGgGGcCCCGCg -3'
miRNA:   3'- gUCCGuCGa--CUU-CGC-GCgCCuGGGCG- -5'
29526 3' -60.8 NC_006151.1 + 27382 0.66 0.687367
Target:  5'- aCGGGCgagaacGGCggGGAGgGCaCGGGCUCGUa -3'
miRNA:   3'- -GUCCG------UCGa-CUUCgCGcGCCUGGGCG- -5'
29526 3' -60.8 NC_006151.1 + 28752 0.68 0.577852
Target:  5'- aAGuGCGaacGCUGGcAGCGUGCcaGGACCCGa -3'
miRNA:   3'- gUC-CGU---CGACU-UCGCGCG--CCUGGGCg -5'
29526 3' -60.8 NC_006151.1 + 29043 0.66 0.647607
Target:  5'- -uGGCAGCgugccaaGAcucgaguuggcGGCGcCGCGGGCCC-Cg -3'
miRNA:   3'- guCCGUCGa------CU-----------UCGC-GCGCCUGGGcG- -5'
29526 3' -60.8 NC_006151.1 + 29129 0.79 0.114839
Target:  5'- gCGGGCcgggaagucGCgGGAGCGCGCGuGACCCGCc -3'
miRNA:   3'- -GUCCGu--------CGaCUUCGCGCGC-CUGGGCG- -5'
29526 3' -60.8 NC_006151.1 + 29441 0.66 0.696235
Target:  5'- gGGGCGGCggggagaGggGaCGCggagggaGCGGGCgCGCc -3'
miRNA:   3'- gUCCGUCGa------CuuC-GCG-------CGCCUGgGCG- -5'
29526 3' -60.8 NC_006151.1 + 29592 0.66 0.656588
Target:  5'- -cGGCGGCUGcGGCcgcggcgGCGgGGGCUgGUg -3'
miRNA:   3'- guCCGUCGACuUCG-------CGCgCCUGGgCG- -5'
29526 3' -60.8 NC_006151.1 + 30337 0.68 0.567982
Target:  5'- gAGGCGGCgGcGGCGCGaGGGCgCGa -3'
miRNA:   3'- gUCCGUCGaCuUCGCGCgCCUGgGCg -5'
29526 3' -60.8 NC_006151.1 + 30821 0.66 0.677472
Target:  5'- gCGGGCGGgaGGAGuUGCGUGGGCggagaggaGCg -3'
miRNA:   3'- -GUCCGUCgaCUUC-GCGCGCCUGgg------CG- -5'
29526 3' -60.8 NC_006151.1 + 30891 0.88 0.02927
Target:  5'- gAGGCGGCgagcGGAGCGCGCGGuagcGCCCGCg -3'
miRNA:   3'- gUCCGUCGa---CUUCGCGCGCC----UGGGCG- -5'
29526 3' -60.8 NC_006151.1 + 30922 0.73 0.303421
Target:  5'- nCGGGCGGCc----CGCGCGGaucGCCCGCg -3'
miRNA:   3'- -GUCCGUCGacuucGCGCGCC---UGGGCG- -5'
29526 3' -60.8 NC_006151.1 + 31718 0.71 0.410736
Target:  5'- cCGGGCGGaacGggGCGUGgagaGGcGCCCGCg -3'
miRNA:   3'- -GUCCGUCga-CuuCGCGCg---CC-UGGGCG- -5'
29526 3' -60.8 NC_006151.1 + 31766 0.69 0.504176
Target:  5'- -cGGCGGCgGgcGCGCGCcGGGCggcucuccuccuucaCCGCc -3'
miRNA:   3'- guCCGUCGaCuuCGCGCG-CCUG---------------GGCG- -5'
29526 3' -60.8 NC_006151.1 + 32583 0.7 0.427882
Target:  5'- cCGGGCggagggggaAGCgggaagggGAAGCGCG-GGGCgCCGCg -3'
miRNA:   3'- -GUCCG---------UCGa-------CUUCGCGCgCCUG-GGCG- -5'
29526 3' -60.8 NC_006151.1 + 32790 0.67 0.617637
Target:  5'- gCGGGgGGCcGAAGCGgaCGCGGAagaagaCGCg -3'
miRNA:   3'- -GUCCgUCGaCUUCGC--GCGCCUgg----GCG- -5'
29526 3' -60.8 NC_006151.1 + 33952 0.73 0.303421
Target:  5'- -cGGgGGCUcGggGCGggaCGCGGcGCCCGCg -3'
miRNA:   3'- guCCgUCGA-CuuCGC---GCGCC-UGGGCG- -5'
29526 3' -60.8 NC_006151.1 + 35178 0.75 0.24029
Target:  5'- cCGGGCAuGCaaaucaGAGGCGCGCGGGagacgccUCCGCg -3'
miRNA:   3'- -GUCCGU-CGa-----CUUCGCGCGCCU-------GGGCG- -5'
29526 3' -60.8 NC_006151.1 + 36574 0.68 0.558155
Target:  5'- --cGCAGCgccGGCacgGCGgGGGCCCGCu -3'
miRNA:   3'- gucCGUCGacuUCG---CGCgCCUGGGCG- -5'
29526 3' -60.8 NC_006151.1 + 36730 0.69 0.499462
Target:  5'- gAGGCGGCUcGAuccucggccgcuuGGCGCcCGGAgcCCCGUc -3'
miRNA:   3'- gUCCGUCGA-CU-------------UCGCGcGCCU--GGGCG- -5'
29526 3' -60.8 NC_006151.1 + 38188 0.68 0.577852
Target:  5'- -uGGCGccGCUGGugcgcuacAGCGUGgacgGGGCCCGCg -3'
miRNA:   3'- guCCGU--CGACU--------UCGCGCg---CCUGGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.