miRNA display CGI


Results 81 - 100 of 381 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29526 3' -60.8 NC_006151.1 + 38298 0.69 0.491025
Target:  5'- gAGGCcGCc---GCGCGgccCGGGCCCGCg -3'
miRNA:   3'- gUCCGuCGacuuCGCGC---GCCUGGGCG- -5'
29526 3' -60.8 NC_006151.1 + 38555 0.67 0.63662
Target:  5'- -cGaGCGGCgcaagaaGAAGCGcCGCgcgcccgGGGCCCGCc -3'
miRNA:   3'- guC-CGUCGa------CUUCGC-GCG-------CCUGGGCG- -5'
29526 3' -60.8 NC_006151.1 + 38684 0.66 0.697218
Target:  5'- gGGGCcccGGCgcAAGCGcCGCucccucggacucGGGCCCGCu -3'
miRNA:   3'- gUCCG---UCGacUUCGC-GCG------------CCUGGGCG- -5'
29526 3' -60.8 NC_006151.1 + 39277 0.67 0.587758
Target:  5'- gGGGguGCUGcugcucucGGCGCG-GGACCUcgGCu -3'
miRNA:   3'- gUCCguCGACu-------UCGCGCgCCUGGG--CG- -5'
29526 3' -60.8 NC_006151.1 + 39917 0.67 0.627626
Target:  5'- gCGGGCuGCUGGAGCcCGacgccgaGGccgcCCCGCu -3'
miRNA:   3'- -GUCCGuCGACUUCGcGCg------CCu---GGGCG- -5'
29526 3' -60.8 NC_006151.1 + 40143 0.66 0.687367
Target:  5'- -cGGCGGCgacGGccGGCccCGCGG-CCCGCu -3'
miRNA:   3'- guCCGUCGa--CU--UCGc-GCGCCuGGGCG- -5'
29526 3' -60.8 NC_006151.1 + 40552 0.67 0.617637
Target:  5'- -cGGCGGUggugGAAGCG-GCGGcggcGgCCGCg -3'
miRNA:   3'- guCCGUCGa---CUUCGCgCGCC----UgGGCG- -5'
29526 3' -60.8 NC_006151.1 + 41504 0.67 0.616638
Target:  5'- aGGGgAGCcaaUGggGCGggcgcCGCGGagcggaagcccccGCCCGCg -3'
miRNA:   3'- gUCCgUCG---ACuuCGC-----GCGCC-------------UGGGCG- -5'
29526 3' -60.8 NC_006151.1 + 41571 0.7 0.436611
Target:  5'- gGGGCAgGCUcGgcGCGCcgaugcgauccGCGGAgCCCGCc -3'
miRNA:   3'- gUCCGU-CGA-CuuCGCG-----------CGCCU-GGGCG- -5'
29526 3' -60.8 NC_006151.1 + 45067 0.73 0.310322
Target:  5'- uGGGaCGGCUGGAGaGCGCGcACCgCGCg -3'
miRNA:   3'- gUCC-GUCGACUUCgCGCGCcUGG-GCG- -5'
29526 3' -60.8 NC_006151.1 + 45335 0.7 0.4634
Target:  5'- -uGGCGGUggaggacgGGAGCGUGUGG-CCCGa -3'
miRNA:   3'- guCCGUCGa-------CUUCGCGCGCCuGGGCg -5'
29526 3' -60.8 NC_006151.1 + 45462 0.69 0.47252
Target:  5'- gGGGCGGCgacgGAcccaggggugagAGCGgG-GGAUCCGCa -3'
miRNA:   3'- gUCCGUCGa---CU------------UCGCgCgCCUGGGCG- -5'
29526 3' -60.8 NC_006151.1 + 45620 0.67 0.607657
Target:  5'- gCGGGCGGaaGggG-GCGUGGAcgcCCCGg -3'
miRNA:   3'- -GUCCGUCgaCuuCgCGCGCCU---GGGCg -5'
29526 3' -60.8 NC_006151.1 + 46590 0.79 0.117807
Target:  5'- aCGGGCGgccguGCUGAGGCGCGagcagagaCGGACCCGg -3'
miRNA:   3'- -GUCCGU-----CGACUUCGCGC--------GCCUGGGCg -5'
29526 3' -60.8 NC_006151.1 + 47292 0.66 0.697218
Target:  5'- -cGGCuGCUGugauggguGGGCggaGCGCGGACCgGg -3'
miRNA:   3'- guCCGuCGAC--------UUCG---CGCGCCUGGgCg -5'
29526 3' -60.8 NC_006151.1 + 47637 0.67 0.617637
Target:  5'- -uGGCGGC---GGCGCGCGGuaCUGCa -3'
miRNA:   3'- guCCGUCGacuUCGCGCGCCugGGCG- -5'
29526 3' -60.8 NC_006151.1 + 49041 0.72 0.361951
Target:  5'- cCAGGCccacgGGCUGGccuucagcguccGGCGCGgGGugCCGa -3'
miRNA:   3'- -GUCCG-----UCGACU------------UCGCGCgCCugGGCg -5'
29526 3' -60.8 NC_006151.1 + 49322 0.72 0.35962
Target:  5'- gGGGCgcccacgcucaaaaGGCcu--GCGCGcCGGACCCGCg -3'
miRNA:   3'- gUCCG--------------UCGacuuCGCGC-GCCUGGGCG- -5'
29526 3' -60.8 NC_006151.1 + 49668 0.67 0.617637
Target:  5'- cCGGGCcGCgcccgGAGGa-CGCGGACgCGCc -3'
miRNA:   3'- -GUCCGuCGa----CUUCgcGCGCCUGgGCG- -5'
29526 3' -60.8 NC_006151.1 + 49820 0.66 0.687367
Target:  5'- gGGGgGGaCgaaggGAcgacgacggcGGCG-GCGGGCCCGCg -3'
miRNA:   3'- gUCCgUC-Ga----CU----------UCGCgCGCCUGGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.