miRNA display CGI


Results 101 - 120 of 381 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29526 3' -60.8 NC_006151.1 + 50372 0.67 0.627626
Target:  5'- -cGcCGGCgGggGCGagaCGCGGGcCCCGCg -3'
miRNA:   3'- guCcGUCGaCuuCGC---GCGCCU-GGGCG- -5'
29526 3' -60.8 NC_006151.1 + 50652 0.68 0.577852
Target:  5'- gCGGGCGGacccGAGucGUGCGCGGccgcaccCCCGCg -3'
miRNA:   3'- -GUCCGUCga--CUU--CGCGCGCCu------GGGCG- -5'
29526 3' -60.8 NC_006151.1 + 51202 0.72 0.339114
Target:  5'- aGGGUGGCcagcagGccGCcCGCGGGCCCGCg -3'
miRNA:   3'- gUCCGUCGa-----CuuCGcGCGCCUGGGCG- -5'
29526 3' -60.8 NC_006151.1 + 51400 0.67 0.637619
Target:  5'- gGGGCgAGCgcgucGcAGCGCGUGcACCCGUc -3'
miRNA:   3'- gUCCG-UCGa----CuUCGCGCGCcUGGGCG- -5'
29526 3' -60.8 NC_006151.1 + 52383 0.71 0.385835
Target:  5'- gGGGCccGCgGggGCG-GCGGGCgCCGCc -3'
miRNA:   3'- gUCCGu-CGaCuuCGCgCGCCUG-GGCG- -5'
29526 3' -60.8 NC_006151.1 + 52731 0.66 0.687367
Target:  5'- gCGGGCgAGCacgacgcccUGcuGCGCGCGcGCCuCGCa -3'
miRNA:   3'- -GUCCG-UCG---------ACuuCGCGCGCcUGG-GCG- -5'
29526 3' -60.8 NC_006151.1 + 52972 0.7 0.445443
Target:  5'- gCAGGCGGCUcauguaCGCGCuGACCuCGCg -3'
miRNA:   3'- -GUCCGUCGAcuuc--GCGCGcCUGG-GCG- -5'
29526 3' -60.8 NC_006151.1 + 53245 0.66 0.686379
Target:  5'- gCAGGUucucGCUGgcGCGCacGCGGcacagcuGCCgCGCg -3'
miRNA:   3'- -GUCCGu---CGACuuCGCG--CGCC-------UGG-GCG- -5'
29526 3' -60.8 NC_006151.1 + 53320 0.68 0.58181
Target:  5'- uGGGCgagcccacacagacgAGCacGggGCGCGCGcGCgCCGCg -3'
miRNA:   3'- gUCCG---------------UCGa-CuuCGCGCGCcUG-GGCG- -5'
29526 3' -60.8 NC_006151.1 + 53793 0.71 0.369797
Target:  5'- uGGGCGGC-GAcGCGCGuCGaGCCCGUg -3'
miRNA:   3'- gUCCGUCGaCUuCGCGC-GCcUGGGCG- -5'
29526 3' -60.8 NC_006151.1 + 54058 0.8 0.111941
Target:  5'- aUAGGUGGCguugGuGGCGCGCGGACCCucuGCg -3'
miRNA:   3'- -GUCCGUCGa---CuUCGCGCGCCUGGG---CG- -5'
29526 3' -60.8 NC_006151.1 + 54419 0.66 0.667542
Target:  5'- gAGGC-GCUGgcGCgGCGCuucggcgacgaGGcGCCCGCc -3'
miRNA:   3'- gUCCGuCGACuuCG-CGCG-----------CC-UGGGCG- -5'
29526 3' -60.8 NC_006151.1 + 54644 0.66 0.677472
Target:  5'- -cGGCGGCgcGAGcGCuGCGUGGACgaGCa -3'
miRNA:   3'- guCCGUCGa-CUU-CG-CGCGCCUGggCG- -5'
29526 3' -60.8 NC_006151.1 + 55461 0.67 0.607657
Target:  5'- -cGGCcccGCcggGggGCGCGCGcccGGCgCCGCg -3'
miRNA:   3'- guCCGu--CGa--CuuCGCGCGC---CUG-GGCG- -5'
29526 3' -60.8 NC_006151.1 + 55880 0.68 0.558155
Target:  5'- -cGGC-GCUGucGCG-GCGGACgUGCg -3'
miRNA:   3'- guCCGuCGACuuCGCgCGCCUGgGCG- -5'
29526 3' -60.8 NC_006151.1 + 56335 0.81 0.093496
Target:  5'- -cGGUGGCUGGAGCGCGCGcGcgcCCCGCc -3'
miRNA:   3'- guCCGUCGACUUCGCGCGC-Cu--GGGCG- -5'
29526 3' -60.8 NC_006151.1 + 57234 0.7 0.4634
Target:  5'- gCAGGCGGC----GCGCGCGGcCUCGg -3'
miRNA:   3'- -GUCCGUCGacuuCGCGCGCCuGGGCg -5'
29526 3' -60.8 NC_006151.1 + 57709 0.66 0.667542
Target:  5'- aAGGCcacgagcgccGGCUuGAcCGCGCGcGCCCGCa -3'
miRNA:   3'- gUCCG----------UCGAcUUcGCGCGCcUGGGCG- -5'
29526 3' -60.8 NC_006151.1 + 57936 0.72 0.361951
Target:  5'- aAGGC-GCgGAAGCcgaGCGCGGGCCacaGCc -3'
miRNA:   3'- gUCCGuCGaCUUCG---CGCGCCUGGg--CG- -5'
29526 3' -60.8 NC_006151.1 + 57981 0.72 0.339114
Target:  5'- uGGGCGGC-GAGcGCGcCGCGGACC-GCc -3'
miRNA:   3'- gUCCGUCGaCUU-CGC-GCGCCUGGgCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.