miRNA display CGI


Results 21 - 40 of 381 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29526 3' -60.8 NC_006151.1 + 134829 0.69 0.500403
Target:  5'- -cGGUGGCgaccGCGCGCgcacacacgcgGGGCCCGCu -3'
miRNA:   3'- guCCGUCGacuuCGCGCG-----------CCUGGGCG- -5'
29526 3' -60.8 NC_006151.1 + 134789 0.71 0.394024
Target:  5'- aCGGGCcugUGAGGC-CGCGGcgGCCCGCg -3'
miRNA:   3'- -GUCCGucgACUUCGcGCGCC--UGGGCG- -5'
29526 3' -60.8 NC_006151.1 + 134754 0.71 0.394024
Target:  5'- -cGaGCAGC----GCGCGCgGGGCCCGCg -3'
miRNA:   3'- guC-CGUCGacuuCGCGCG-CCUGGGCG- -5'
29526 3' -60.8 NC_006151.1 + 134108 0.69 0.491025
Target:  5'- aGGGCGGCUGcuGGUGUGCcGGAgUCCGg -3'
miRNA:   3'- gUCCGUCGACu-UCGCGCG-CCU-GGGCg -5'
29526 3' -60.8 NC_006151.1 + 133970 0.66 0.674497
Target:  5'- -cGGCAGCggccccucggugGAgacgauggaagagAGCGCGgGGGCCaccaGCg -3'
miRNA:   3'- guCCGUCGa-----------CU-------------UCGCGCgCCUGGg---CG- -5'
29526 3' -60.8 NC_006151.1 + 133501 0.73 0.289975
Target:  5'- -uGGCGGCgcggGggGCGCGggaGGAgCCGUa -3'
miRNA:   3'- guCCGUCGa---CuuCGCGCg--CCUgGGCG- -5'
29526 3' -60.8 NC_006151.1 + 133441 0.71 0.394024
Target:  5'- -uGGCGGCcGAGGCGCucuuggccccgGuCGaGGCCCGCg -3'
miRNA:   3'- guCCGUCGaCUUCGCG-----------C-GC-CUGGGCG- -5'
29526 3' -60.8 NC_006151.1 + 133389 0.67 0.587758
Target:  5'- gGGGCGGCggccGggGCcgaGCGGGCggucuuggCCGCg -3'
miRNA:   3'- gUCCGUCGa---CuuCGcg-CGCCUG--------GGCG- -5'
29526 3' -60.8 NC_006151.1 + 133314 0.73 0.289975
Target:  5'- gGGGCGGCccgugucGAGGCGCGCcGGGCggccgguuCCGCg -3'
miRNA:   3'- gUCCGUCGa------CUUCGCGCG-CCUG--------GGCG- -5'
29526 3' -60.8 NC_006151.1 + 132803 0.7 0.418399
Target:  5'- gAGGC-GCUGGuacAGCGCGUccGGgcuggccGCCCGCg -3'
miRNA:   3'- gUCCGuCGACU---UCGCGCG--CC-------UGGGCG- -5'
29526 3' -60.8 NC_006151.1 + 132488 0.68 0.538653
Target:  5'- gCAGGCGcGCgu-AGCGCuccucGCGcGCCCGCa -3'
miRNA:   3'- -GUCCGU-CGacuUCGCG-----CGCcUGGGCG- -5'
29526 3' -60.8 NC_006151.1 + 132366 0.66 0.674497
Target:  5'- cCAGGgGGCc-AGGCGCGCGacgucgcgguaguaGcGCCCGCg -3'
miRNA:   3'- -GUCCgUCGacUUCGCGCGC--------------C-UGGGCG- -5'
29526 3' -60.8 NC_006151.1 + 132148 0.66 0.647607
Target:  5'- -cGGUGGUUGAcggcgcgcAGCuGCGCGG-CCgGCa -3'
miRNA:   3'- guCCGUCGACU--------UCG-CGCGCCuGGgCG- -5'
29526 3' -60.8 NC_006151.1 + 132033 0.7 0.436611
Target:  5'- gAGGUAGCcgGcGGCGCGCGG-CagCGCg -3'
miRNA:   3'- gUCCGUCGa-CuUCGCGCGCCuGg-GCG- -5'
29526 3' -60.8 NC_006151.1 + 131912 0.67 0.627626
Target:  5'- gGGGCGGCaGcaGGGCcucCGCGGugCUGCc -3'
miRNA:   3'- gUCCGUCGaC--UUCGc--GCGCCugGGCG- -5'
29526 3' -60.8 NC_006151.1 + 131725 0.68 0.577852
Target:  5'- gAGGUGGUaggcGggGUG-GCGGGCCCGg -3'
miRNA:   3'- gUCCGUCGa---CuuCGCgCGCCUGGGCg -5'
29526 3' -60.8 NC_006151.1 + 131443 0.67 0.587758
Target:  5'- uCGGGCGGCgggcgGAAGU-C-CGGGCgCCGCa -3'
miRNA:   3'- -GUCCGUCGa----CUUCGcGcGCCUG-GGCG- -5'
29526 3' -60.8 NC_006151.1 + 131121 0.66 0.687367
Target:  5'- --cGCGGCgcggGAGGC-CGCGG-CgCCGCg -3'
miRNA:   3'- gucCGUCGa---CUUCGcGCGCCuG-GGCG- -5'
29526 3' -60.8 NC_006151.1 + 130943 0.77 0.167519
Target:  5'- gGGGCGGCggGggGuCGCGCGGGCgCGg -3'
miRNA:   3'- gUCCGUCGa-CuuC-GCGCGCCUGgGCg -5'
29526 3' -60.8 NC_006151.1 + 130882 0.7 0.442783
Target:  5'- uGGGCGGCggcggugGAGGCGgcggccguCGCcgucgucgguggccGGGCCCGCg -3'
miRNA:   3'- gUCCGUCGa------CUUCGC--------GCG--------------CCUGGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.