miRNA display CGI


Results 41 - 60 of 381 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29526 3' -60.8 NC_006151.1 + 130834 0.66 0.687367
Target:  5'- aGGcGCGGCgcgGAgucgucgccgucGGCgGCGCGGGCgggaCCGCa -3'
miRNA:   3'- gUC-CGUCGa--CU------------UCG-CGCGCCUG----GGCG- -5'
29526 3' -60.8 NC_006151.1 + 130783 0.66 0.665553
Target:  5'- uCGGGCaugucgcgcguccAGCUGGcguacgcGGCGUcCGGGuCCCGCu -3'
miRNA:   3'- -GUCCG-------------UCGACU-------UCGCGcGCCU-GGGCG- -5'
29526 3' -60.8 NC_006151.1 + 130714 0.71 0.377759
Target:  5'- gGGGCGGCccgGggGCccGCGCGG--CCGCg -3'
miRNA:   3'- gUCCGUCGa--CuuCG--CGCGCCugGGCG- -5'
29526 3' -60.8 NC_006151.1 + 130289 0.7 0.425283
Target:  5'- gCGGGCgcgcgccggccgacGGCgcGGAGCGCGCGcGCCgCGCg -3'
miRNA:   3'- -GUCCG--------------UCGa-CUUCGCGCGCcUGG-GCG- -5'
29526 3' -60.8 NC_006151.1 + 130253 0.7 0.444556
Target:  5'- aAGGC-GCgGAagaggccGGCGCGCGGcCCCGa -3'
miRNA:   3'- gUCCGuCGaCU-------UCGCGCGCCuGGGCg -5'
29526 3' -60.8 NC_006151.1 + 129811 0.71 0.376957
Target:  5'- gAGGCccgugAGCgcGGAGCGCGCGGcggcguaGCCCaGCg -3'
miRNA:   3'- gUCCG-----UCGa-CUUCGCGCGCC-------UGGG-CG- -5'
29526 3' -60.8 NC_006151.1 + 129779 0.7 0.436611
Target:  5'- aGGGCGucGCUcccGCcgGCGUGGGCCCGCa -3'
miRNA:   3'- gUCCGU--CGAcuuCG--CGCGCCUGGGCG- -5'
29526 3' -60.8 NC_006151.1 + 129715 0.85 0.047286
Target:  5'- gCAGGCAGUUGAgcAGCagguuCGCGGGCCCGCg -3'
miRNA:   3'- -GUCCGUCGACU--UCGc----GCGCCUGGGCG- -5'
29526 3' -60.8 NC_006151.1 + 129496 0.7 0.436611
Target:  5'- aGGGCAGCgcGGGCGCGauGACgagCCGCu -3'
miRNA:   3'- gUCCGUCGacUUCGCGCgcCUG---GGCG- -5'
29526 3' -60.8 NC_006151.1 + 129226 0.74 0.258413
Target:  5'- gCAGGCAGCUGgcGCGgGUGcGCCCc- -3'
miRNA:   3'- -GUCCGUCGACuuCGCgCGCcUGGGcg -5'
29526 3' -60.8 NC_006151.1 + 128803 0.7 0.436611
Target:  5'- -cGGCgAGCgcGgcGCGCGUGGcCCCGUa -3'
miRNA:   3'- guCCG-UCGa-CuuCGCGCGCCuGGGCG- -5'
29526 3' -60.8 NC_006151.1 + 128536 0.66 0.657585
Target:  5'- gAGGCcacGGCg--GGCccgccgGCGCGGugCCGCc -3'
miRNA:   3'- gUCCG---UCGacuUCG------CGCGCCugGGCG- -5'
29526 3' -60.8 NC_006151.1 + 128119 0.69 0.48173
Target:  5'- --aGCAcGCgcgcGAAGCGCuccGUGGGCCCGCc -3'
miRNA:   3'- gucCGU-CGa---CUUCGCG---CGCCUGGGCG- -5'
29526 3' -60.8 NC_006151.1 + 128055 0.66 0.697218
Target:  5'- -cGGCAGCggcgGcuGCGCGgGGGCgaCCGa -3'
miRNA:   3'- guCCGUCGa---CuuCGCGCgCCUG--GGCg -5'
29526 3' -60.8 NC_006151.1 + 128015 0.68 0.538653
Target:  5'- gGGGCGGCggcGAcGGCGUcuGCGacGCCCGCg -3'
miRNA:   3'- gUCCGUCGa--CU-UCGCG--CGCc-UGGGCG- -5'
29526 3' -60.8 NC_006151.1 + 127472 0.77 0.167519
Target:  5'- uGGGCGGCgcgGAacgAGC-CGCGGAcCCCGCg -3'
miRNA:   3'- gUCCGUCGa--CU---UCGcGCGCCU-GGGCG- -5'
29526 3' -60.8 NC_006151.1 + 127385 0.73 0.308239
Target:  5'- gGGGUGGCgGggGC-CGCGGccgagucgacgggaGCCCGCg -3'
miRNA:   3'- gUCCGUCGaCuuCGcGCGCC--------------UGGGCG- -5'
29526 3' -60.8 NC_006151.1 + 127296 0.72 0.324481
Target:  5'- gGGGguGCUGGuacaGGCcgucguccGCGCGGGUCCGCg -3'
miRNA:   3'- gUCCguCGACU----UCG--------CGCGCCUGGGCG- -5'
29526 3' -60.8 NC_006151.1 + 126359 0.7 0.427882
Target:  5'- gCAGG-AGCacaAGGCGCgcaagaagaacaGCGGGCCCGCg -3'
miRNA:   3'- -GUCCgUCGac-UUCGCG------------CGCCUGGGCG- -5'
29526 3' -60.8 NC_006151.1 + 125156 0.69 0.48173
Target:  5'- uGGcGCAGCUGuacGCGCGCGaGCUCGa -3'
miRNA:   3'- gUC-CGUCGACuu-CGCGCGCcUGGGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.