miRNA display CGI


Results 61 - 80 of 381 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29526 3' -60.8 NC_006151.1 + 124970 0.66 0.677472
Target:  5'- uCAcGCAGCUGGaccugcAGCGCGUGcACCUGg -3'
miRNA:   3'- -GUcCGUCGACU------UCGCGCGCcUGGGCg -5'
29526 3' -60.8 NC_006151.1 + 124143 0.7 0.4634
Target:  5'- uGGuGCGGCUGGAGCccgaGCaGGCCUGCc -3'
miRNA:   3'- gUC-CGUCGACUUCGcg--CGcCUGGGCG- -5'
29526 3' -60.8 NC_006151.1 + 123869 0.66 0.677472
Target:  5'- cUAGcGCuGCUGcugcuGGCGCucgccGCGGcCCCGCc -3'
miRNA:   3'- -GUC-CGuCGACu----UCGCG-----CGCCuGGGCG- -5'
29526 3' -60.8 NC_006151.1 + 123736 0.66 0.657585
Target:  5'- gAGGCGucaugcccGCUGuGGCggucuuugGCGCGGGCCC-Cg -3'
miRNA:   3'- gUCCGU--------CGACuUCG--------CGCGCCUGGGcG- -5'
29526 3' -60.8 NC_006151.1 + 123508 0.69 0.519389
Target:  5'- gAGG-AGCUGgcGCGCuucaugGUGG-CCCGCg -3'
miRNA:   3'- gUCCgUCGACuuCGCG------CGCCuGGGCG- -5'
29526 3' -60.8 NC_006151.1 + 123259 0.7 0.445443
Target:  5'- gAGGCcGCcgc-GCGCGCGGGCaCCGUc -3'
miRNA:   3'- gUCCGuCGacuuCGCGCGCCUG-GGCG- -5'
29526 3' -60.8 NC_006151.1 + 123023 0.7 0.454374
Target:  5'- -cGGCGGacgccgUGgcGUGgGCGGACCUGCc -3'
miRNA:   3'- guCCGUCg-----ACuuCGCgCGCCUGGGCG- -5'
29526 3' -60.8 NC_006151.1 + 122949 0.75 0.229715
Target:  5'- -cGGCGGCgccgcGggGgGCGCGGACgCCGg -3'
miRNA:   3'- guCCGUCGa----CuuCgCGCGCCUG-GGCg -5'
29526 3' -60.8 NC_006151.1 + 122774 0.67 0.597696
Target:  5'- aCGGGCuGCucgUGGgcGGCuGCGCGGcCUCGCc -3'
miRNA:   3'- -GUCCGuCG---ACU--UCG-CGCGCCuGGGCG- -5'
29526 3' -60.8 NC_006151.1 + 122492 0.74 0.264493
Target:  5'- gCGGGCgagacGGCgcgccGGCGCGCGGACgCGCu -3'
miRNA:   3'- -GUCCG-----UCGacu--UCGCGCGCCUGgGCG- -5'
29526 3' -60.8 NC_006151.1 + 122450 0.67 0.637619
Target:  5'- gAGGCGGCguccacgGcGGCG-GCGGGCgCCGa -3'
miRNA:   3'- gUCCGUCGa------CuUCGCgCGCCUG-GGCg -5'
29526 3' -60.8 NC_006151.1 + 122394 0.69 0.500403
Target:  5'- gCGGGCGcgcGCUGGcGGCGCucgccgccGUGGACgCCGCc -3'
miRNA:   3'- -GUCCGU---CGACU-UCGCG--------CGCCUG-GGCG- -5'
29526 3' -60.8 NC_006151.1 + 122315 0.82 0.080014
Target:  5'- -cGGCAGCUGGcgguGCGCGUGGACCC-Cg -3'
miRNA:   3'- guCCGUCGACUu---CGCGCGCCUGGGcG- -5'
29526 3' -60.8 NC_006151.1 + 122173 0.69 0.500403
Target:  5'- -cGGCGGCg--GGCuCGUGGugCCGCc -3'
miRNA:   3'- guCCGUCGacuUCGcGCGCCugGGCG- -5'
29526 3' -60.8 NC_006151.1 + 121758 0.69 0.48173
Target:  5'- -uGGagauGCUGAAGCGCuGCGacCCCGCg -3'
miRNA:   3'- guCCgu--CGACUUCGCG-CGCcuGGGCG- -5'
29526 3' -60.8 NC_006151.1 + 121664 0.67 0.607657
Target:  5'- gCGGGCGGagggggGGAGCGaGCGGgccgACCCGg -3'
miRNA:   3'- -GUCCGUCga----CUUCGCgCGCC----UGGGCg -5'
29526 3' -60.8 NC_006151.1 + 121309 0.7 0.454374
Target:  5'- aCGGGC-GCUGGAGCGUggagGCGG--CCGCc -3'
miRNA:   3'- -GUCCGuCGACUUCGCG----CGCCugGGCG- -5'
29526 3' -60.8 NC_006151.1 + 120728 0.69 0.519389
Target:  5'- --uGCAGUcGAAGCGCccGCGGgACCCGg -3'
miRNA:   3'- gucCGUCGaCUUCGCG--CGCC-UGGGCg -5'
29526 3' -60.8 NC_006151.1 + 120319 0.75 0.235231
Target:  5'- uCGGGCAGCcucucgGAcGcCGCGCGcGCCCGCg -3'
miRNA:   3'- -GUCCGUCGa-----CUuC-GCGCGCcUGGGCG- -5'
29526 3' -60.8 NC_006151.1 + 120209 0.71 0.377759
Target:  5'- aGGGCAGCgcgGAgcccccGGCGCGCgaccacgacggGGACCUGg -3'
miRNA:   3'- gUCCGUCGa--CU------UCGCGCG-----------CCUGGGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.