miRNA display CGI


Results 81 - 100 of 381 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29526 3' -60.8 NC_006151.1 + 120059 0.69 0.48173
Target:  5'- aCGGGCAGCccgugGAGGgGCGCaacuUCCGCa -3'
miRNA:   3'- -GUCCGUCGa----CUUCgCGCGccu-GGGCG- -5'
29526 3' -60.8 NC_006151.1 + 119339 0.66 0.664557
Target:  5'- cCGGGCAaccacgacuucGCcauggaccaccuggUGAuGGCGUGCGGcuucuGCCCGCa -3'
miRNA:   3'- -GUCCGU-----------CG--------------ACU-UCGCGCGCC-----UGGGCG- -5'
29526 3' -60.8 NC_006151.1 + 118880 0.7 0.454374
Target:  5'- -cGGCGGCgcgGcGGCGaCGCGGccGCCgGCg -3'
miRNA:   3'- guCCGUCGa--CuUCGC-GCGCC--UGGgCG- -5'
29526 3' -60.8 NC_006151.1 + 118573 0.67 0.637619
Target:  5'- aCGGGCAc--GAGGCGUgGCGcGugCCGCu -3'
miRNA:   3'- -GUCCGUcgaCUUCGCG-CGC-CugGGCG- -5'
29526 3' -60.8 NC_006151.1 + 118431 0.67 0.637619
Target:  5'- aCGGGCGcGgaGGuguGCGCGCGGcucgGCCUGg -3'
miRNA:   3'- -GUCCGU-CgaCUu--CGCGCGCC----UGGGCg -5'
29526 3' -60.8 NC_006151.1 + 117252 0.68 0.528989
Target:  5'- gCGGGCccgaGGCgcggGccGCGCGCGGcCgCCGCc -3'
miRNA:   3'- -GUCCG----UCGa---CuuCGCGCGCCuG-GGCG- -5'
29526 3' -60.8 NC_006151.1 + 117118 0.69 0.482655
Target:  5'- cCAGGcCGGCgcacaccgucucgcgGAGGUGCGCGaccaggcGCCCGCu -3'
miRNA:   3'- -GUCC-GUCGa--------------CUUCGCGCGCc------UGGGCG- -5'
29526 3' -60.8 NC_006151.1 + 116303 0.68 0.547402
Target:  5'- gCAcGCAGUagcgcccgaUGAcGCcgcgcucGCGCGGGCCCGCg -3'
miRNA:   3'- -GUcCGUCG---------ACUuCG-------CGCGCCUGGGCG- -5'
29526 3' -60.8 NC_006151.1 + 116128 0.82 0.07399
Target:  5'- uCGGGCAGCacGAAGcCGCGCGaGCCCGCg -3'
miRNA:   3'- -GUCCGUCGa-CUUC-GCGCGCcUGGGCG- -5'
29526 3' -60.8 NC_006151.1 + 115918 0.71 0.402325
Target:  5'- aAGGC-GCUGAAcucguccuCGCGCaGGCCCGCc -3'
miRNA:   3'- gUCCGuCGACUUc-------GCGCGcCUGGGCG- -5'
29526 3' -60.8 NC_006151.1 + 115568 0.66 0.667542
Target:  5'- gCGGGCG-----GGCGCGCGGGCagguCGCg -3'
miRNA:   3'- -GUCCGUcgacuUCGCGCGCCUGg---GCG- -5'
29526 3' -60.8 NC_006151.1 + 115432 0.73 0.317342
Target:  5'- gGGGCGGaaGAGGuCGCGCGuGAUgCGCg -3'
miRNA:   3'- gUCCGUCgaCUUC-GCGCGC-CUGgGCG- -5'
29526 3' -60.8 NC_006151.1 + 115163 0.71 0.406517
Target:  5'- aAGGCGGCgaagccgcgcggcagGggGCGCuccagccagcgcgccGCGGGCgCGCg -3'
miRNA:   3'- gUCCGUCGa--------------CuuCGCG---------------CGCCUGgGCG- -5'
29526 3' -60.8 NC_006151.1 + 114876 0.7 0.4634
Target:  5'- cCAGGUcGCUGAcgAGCagcuucccggGCGCGaGGCCCGg -3'
miRNA:   3'- -GUCCGuCGACU--UCG----------CGCGC-CUGGGCg -5'
29526 3' -60.8 NC_006151.1 + 114684 0.67 0.637619
Target:  5'- aAGGCcucguGCUcGAAGgGCGCGucCCCGg -3'
miRNA:   3'- gUCCGu----CGA-CUUCgCGCGCcuGGGCg -5'
29526 3' -60.8 NC_006151.1 + 113905 0.79 0.117807
Target:  5'- -cGGCGcaagacGCUGAcGCGCGCGG-CCCGCg -3'
miRNA:   3'- guCCGU------CGACUuCGCGCGCCuGGGCG- -5'
29526 3' -60.8 NC_006151.1 + 113607 0.7 0.427882
Target:  5'- --cGUGGCcG-AGCGCcagGCGGACCCGCg -3'
miRNA:   3'- gucCGUCGaCuUCGCG---CGCCUGGGCG- -5'
29526 3' -60.8 NC_006151.1 + 113540 0.8 0.09845
Target:  5'- -uGGC-GCUGAugcGCGcCGCGGGCCCGCg -3'
miRNA:   3'- guCCGuCGACUu--CGC-GCGCCUGGGCG- -5'
29526 3' -60.8 NC_006151.1 + 113345 0.7 0.4634
Target:  5'- -uGGC-GCUGAAGCacguGCGCGGccgcaaCCGCa -3'
miRNA:   3'- guCCGuCGACUUCG----CGCGCCug----GGCG- -5'
29526 3' -60.8 NC_006151.1 + 113108 0.67 0.607657
Target:  5'- gGGGCGGg-GccGCGgaCGCGGACgCCGCc -3'
miRNA:   3'- gUCCGUCgaCuuCGC--GCGCCUG-GGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.