miRNA display CGI


Results 101 - 120 of 381 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29526 3' -60.8 NC_006151.1 + 113051 0.73 0.317342
Target:  5'- -cGGCGGC-GGAGCGCGaGGACgaCGCg -3'
miRNA:   3'- guCCGUCGaCUUCGCGCgCCUGg-GCG- -5'
29526 3' -60.8 NC_006151.1 + 112805 0.66 0.667542
Target:  5'- gCGGGCGcgcgucGCUGcAGCGCGCcuucGCCaCGCg -3'
miRNA:   3'- -GUCCGU------CGACuUCGCGCGcc--UGG-GCG- -5'
29526 3' -60.8 NC_006151.1 + 112035 0.66 0.667542
Target:  5'- -cGGgAGCUGGggccGGCGgGCGGGCggCgGCg -3'
miRNA:   3'- guCCgUCGACU----UCGCgCGCCUG--GgCG- -5'
29526 3' -60.8 NC_006151.1 + 111350 0.69 0.500403
Target:  5'- uCGGGCGGau-GGGCGCGCGGGgcgagggcccCUCGCc -3'
miRNA:   3'- -GUCCGUCgacUUCGCGCGCCU----------GGGCG- -5'
29526 3' -60.8 NC_006151.1 + 111113 0.66 0.643613
Target:  5'- -uGGCucGGCggGGAGCGCGCGucugugcgcgccCCCGCg -3'
miRNA:   3'- guCCG--UCGa-CUUCGCGCGCcu----------GGGCG- -5'
29526 3' -60.8 NC_006151.1 + 110132 0.68 0.528989
Target:  5'- aCAGGCGGUacauGCGCGCcaccGGACUCGg -3'
miRNA:   3'- -GUCCGUCGacuuCGCGCG----CCUGGGCg -5'
29526 3' -60.8 NC_006151.1 + 109101 0.67 0.637619
Target:  5'- gAGGCccAG-UGAGGCGagcCGCcGGCCCGCg -3'
miRNA:   3'- gUCCG--UCgACUUCGC---GCGcCUGGGCG- -5'
29526 3' -60.8 NC_006151.1 + 108677 0.67 0.627626
Target:  5'- --aGCAGCcGGAGCG-GCGG-CCCGa -3'
miRNA:   3'- gucCGUCGaCUUCGCgCGCCuGGGCg -5'
29526 3' -60.8 NC_006151.1 + 108304 0.67 0.601678
Target:  5'- -cGGCGGC-GAcccccacgccccccGCGCcCGGGCCCGCc -3'
miRNA:   3'- guCCGUCGaCUu-------------CGCGcGCCUGGGCG- -5'
29526 3' -60.8 NC_006151.1 + 107197 0.69 0.500403
Target:  5'- gAGGacCAGCUGccgGAGauggacccCGCGGACCCGCu -3'
miRNA:   3'- gUCC--GUCGAC---UUCgc------GCGCCUGGGCG- -5'
29526 3' -60.8 NC_006151.1 + 107006 0.67 0.641615
Target:  5'- --cGCAGCUGGAGCGgcucucggcgcugauCGCGGcgcggccccugGCCgGCg -3'
miRNA:   3'- gucCGUCGACUUCGC---------------GCGCC-----------UGGgCG- -5'
29526 3' -60.8 NC_006151.1 + 106496 0.73 0.303421
Target:  5'- aCGGGCcagcGGCUGgcGCGCGCcgugccGGGCgCGCu -3'
miRNA:   3'- -GUCCG----UCGACuuCGCGCG------CCUGgGCG- -5'
29526 3' -60.8 NC_006151.1 + 106370 0.66 0.667542
Target:  5'- gCGGGCGcGCgcccGC-CGCGGcGCCCGCu -3'
miRNA:   3'- -GUCCGU-CGacuuCGcGCGCC-UGGGCG- -5'
29526 3' -60.8 NC_006151.1 + 106166 0.72 0.346609
Target:  5'- gGGGC-GCUGGAccGCGuCGCGcACCCGCc -3'
miRNA:   3'- gUCCGuCGACUU--CGC-GCGCcUGGGCG- -5'
29526 3' -60.8 NC_006151.1 + 105800 0.69 0.500403
Target:  5'- gAGGC-GC-GGAGCGaCGCGGACgCGg -3'
miRNA:   3'- gUCCGuCGaCUUCGC-GCGCCUGgGCg -5'
29526 3' -60.8 NC_006151.1 + 105686 0.68 0.567982
Target:  5'- -cGGCGGCgcGggGCcgacgccgGCGCGG-CCgCGCg -3'
miRNA:   3'- guCCGUCGa-CuuCG--------CGCGCCuGG-GCG- -5'
29526 3' -60.8 NC_006151.1 + 105600 0.72 0.331738
Target:  5'- gCGGaGCGGCUGccGCG-GUGGAuCCCGCc -3'
miRNA:   3'- -GUC-CGUCGACuuCGCgCGCCU-GGGCG- -5'
29526 3' -60.8 NC_006151.1 + 105267 0.66 0.697218
Target:  5'- gAGGCcuGGgaGGAcuuugggcGCGCGCGcGGCCgCGCc -3'
miRNA:   3'- gUCCG--UCgaCUU--------CGCGCGC-CUGG-GCG- -5'
29526 3' -60.8 NC_006151.1 + 104911 0.67 0.617637
Target:  5'- -cGGCGGC---GGCGCGCGa--CCGCg -3'
miRNA:   3'- guCCGUCGacuUCGCGCGCcugGGCG- -5'
29526 3' -60.8 NC_006151.1 + 104858 0.69 0.491025
Target:  5'- cCAGGCcgcGGCgacGGAGCGCGCcacgcGCCUGCu -3'
miRNA:   3'- -GUCCG---UCGa--CUUCGCGCGcc---UGGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.