miRNA display CGI


Results 81 - 100 of 381 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29526 3' -60.8 NC_006151.1 + 10470 0.66 0.667542
Target:  5'- -cGGCGGCggugaagGAggagagccgcccGGCGCGC--GCCCGCc -3'
miRNA:   3'- guCCGUCGa------CU------------UCGCGCGccUGGGCG- -5'
29526 3' -60.8 NC_006151.1 + 139550 0.66 0.667542
Target:  5'- uCGGGgAGCgagGAgcGGCGCcCGG-UCCGCg -3'
miRNA:   3'- -GUCCgUCGa--CU--UCGCGcGCCuGGGCG- -5'
29526 3' -60.8 NC_006151.1 + 115568 0.66 0.667542
Target:  5'- gCGGGCG-----GGCGCGCGGGCagguCGCg -3'
miRNA:   3'- -GUCCGUcgacuUCGCGCGCCUGg---GCG- -5'
29526 3' -60.8 NC_006151.1 + 106370 0.66 0.667542
Target:  5'- gCGGGCGcGCgcccGC-CGCGGcGCCCGCu -3'
miRNA:   3'- -GUCCGU-CGacuuCGcGCGCC-UGGGCG- -5'
29526 3' -60.8 NC_006151.1 + 90742 0.66 0.667542
Target:  5'- -cGGCGGCgcccucgGggGCG-GCGGGCaCgGUg -3'
miRNA:   3'- guCCGUCGa------CuuCGCgCGCCUG-GgCG- -5'
29526 3' -60.8 NC_006151.1 + 27196 0.66 0.667542
Target:  5'- gGGGCcGCgcaGAAgGCGcCGgGGcCCCGCg -3'
miRNA:   3'- gUCCGuCGa--CUU-CGC-GCgCCuGGGCG- -5'
29526 3' -60.8 NC_006151.1 + 112805 0.66 0.667542
Target:  5'- gCGGGCGcgcgucGCUGcAGCGCGCcuucGCCaCGCg -3'
miRNA:   3'- -GUCCGU------CGACuUCGCGCGcc--UGG-GCG- -5'
29526 3' -60.8 NC_006151.1 + 133970 0.66 0.674497
Target:  5'- -cGGCAGCggccccucggugGAgacgauggaagagAGCGCGgGGGCCaccaGCg -3'
miRNA:   3'- guCCGUCGa-----------CU-------------UCGCGCgCCUGGg---CG- -5'
29526 3' -60.8 NC_006151.1 + 102322 0.66 0.676481
Target:  5'- aCAuGguGCUGAcggaGGCGCGCGcgcugcuggacguGGCCgGCg -3'
miRNA:   3'- -GUcCguCGACU----UCGCGCGC-------------CUGGgCG- -5'
29526 3' -60.8 NC_006151.1 + 99903 0.66 0.677472
Target:  5'- gCAGGU-GCUGAcgugGGCGCGCGacuacGGCgCCGg -3'
miRNA:   3'- -GUCCGuCGACU----UCGCGCGC-----CUG-GGCg -5'
29526 3' -60.8 NC_006151.1 + 49820 0.66 0.687367
Target:  5'- gGGGgGGaCgaaggGAcgacgacggcGGCG-GCGGGCCCGCg -3'
miRNA:   3'- gUCCgUC-Ga----CU----------UCGCgCGCCUGGGCG- -5'
29526 3' -60.8 NC_006151.1 + 53245 0.66 0.686379
Target:  5'- gCAGGUucucGCUGgcGCGCacGCGGcacagcuGCCgCGCg -3'
miRNA:   3'- -GUCCGu---CGACuuCGCG--CGCC-------UGG-GCG- -5'
29526 3' -60.8 NC_006151.1 + 54644 0.66 0.677472
Target:  5'- -cGGCGGCgcGAGcGCuGCGUGGACgaGCa -3'
miRNA:   3'- guCCGUCGa-CUU-CG-CGCGCCUGggCG- -5'
29526 3' -60.8 NC_006151.1 + 84636 0.66 0.677472
Target:  5'- -cGGC-GCUGGacaacgccauGGC-CGCGGGCgCGCg -3'
miRNA:   3'- guCCGuCGACU----------UCGcGCGCCUGgGCG- -5'
29526 3' -60.8 NC_006151.1 + 81494 0.66 0.677472
Target:  5'- cCAcGCGGCcGucGGCGagaGCGcGGCCCGCg -3'
miRNA:   3'- -GUcCGUCGaCu-UCGCg--CGC-CUGGGCG- -5'
29526 3' -60.8 NC_006151.1 + 137918 0.66 0.677472
Target:  5'- -cGGCGGCUGccacGGGCGCcugcuccccuuuGgGGACgCGCc -3'
miRNA:   3'- guCCGUCGAC----UUCGCG------------CgCCUGgGCG- -5'
29526 3' -60.8 NC_006151.1 + 123869 0.66 0.677472
Target:  5'- cUAGcGCuGCUGcugcuGGCGCucgccGCGGcCCCGCc -3'
miRNA:   3'- -GUC-CGuCGACu----UCGCG-----CGCCuGGGCG- -5'
29526 3' -60.8 NC_006151.1 + 65305 0.66 0.677472
Target:  5'- cCAGGUGGCUG-AGCcCGCGG--CCGUu -3'
miRNA:   3'- -GUCCGUCGACuUCGcGCGCCugGGCG- -5'
29526 3' -60.8 NC_006151.1 + 30821 0.66 0.677472
Target:  5'- gCGGGCGGgaGGAGuUGCGUGGGCggagaggaGCg -3'
miRNA:   3'- -GUCCGUCgaCUUC-GCGCGCCUGgg------CG- -5'
29526 3' -60.8 NC_006151.1 + 124970 0.66 0.677472
Target:  5'- uCAcGCAGCUGGaccugcAGCGCGUGcACCUGg -3'
miRNA:   3'- -GUcCGUCGACU------UCGCGCGCcUGGGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.