miRNA display CGI


Results 21 - 40 of 381 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29526 3' -60.8 NC_006151.1 + 52731 0.66 0.687367
Target:  5'- gCGGGCgAGCacgacgcccUGcuGCGCGCGcGCCuCGCa -3'
miRNA:   3'- -GUCCG-UCG---------ACuuCGCGCGCcUGG-GCG- -5'
29526 3' -60.8 NC_006151.1 + 72608 0.66 0.687367
Target:  5'- gGGGCagGGCgGAgacgacgguccGGCGguccCGCGGuCCCGCg -3'
miRNA:   3'- gUCCG--UCGaCU-----------UCGC----GCGCCuGGGCG- -5'
29526 3' -60.8 NC_006151.1 + 85775 0.66 0.687367
Target:  5'- -uGGC-GCUGGA-CGCGCacucGAUCCGCg -3'
miRNA:   3'- guCCGuCGACUUcGCGCGc---CUGGGCG- -5'
29526 3' -60.8 NC_006151.1 + 131121 0.66 0.687367
Target:  5'- --cGCGGCgcggGAGGC-CGCGG-CgCCGCg -3'
miRNA:   3'- gucCGUCGa---CUUCGcGCGCCuG-GGCG- -5'
29526 3' -60.8 NC_006151.1 + 40143 0.66 0.687367
Target:  5'- -cGGCGGCgacGGccGGCccCGCGG-CCCGCu -3'
miRNA:   3'- guCCGUCGa--CU--UCGc-GCGCCuGGGCG- -5'
29526 3' -60.8 NC_006151.1 + 73590 0.66 0.687367
Target:  5'- aGGGCgaAGCcGggGUGCaGCuGGCgCCGCa -3'
miRNA:   3'- gUCCG--UCGaCuuCGCG-CGcCUG-GGCG- -5'
29526 3' -60.8 NC_006151.1 + 130834 0.66 0.687367
Target:  5'- aGGcGCGGCgcgGAgucgucgccgucGGCgGCGCGGGCgggaCCGCa -3'
miRNA:   3'- gUC-CGUCGa--CU------------UCG-CGCGCCUG----GGCG- -5'
29526 3' -60.8 NC_006151.1 + 53245 0.66 0.686379
Target:  5'- gCAGGUucucGCUGgcGCGCacGCGGcacagcuGCCgCGCg -3'
miRNA:   3'- -GUCCGu---CGACuuCGCG--CGCC-------UGG-GCG- -5'
29526 3' -60.8 NC_006151.1 + 99903 0.66 0.677472
Target:  5'- gCAGGU-GCUGAcgugGGCGCGCGacuacGGCgCCGg -3'
miRNA:   3'- -GUCCGuCGACU----UCGCGCGC-----CUG-GGCg -5'
29526 3' -60.8 NC_006151.1 + 124970 0.66 0.677472
Target:  5'- uCAcGCAGCUGGaccugcAGCGCGUGcACCUGg -3'
miRNA:   3'- -GUcCGUCGACU------UCGCGCGCcUGGGCg -5'
29526 3' -60.8 NC_006151.1 + 30821 0.66 0.677472
Target:  5'- gCGGGCGGgaGGAGuUGCGUGGGCggagaggaGCg -3'
miRNA:   3'- -GUCCGUCgaCUUC-GCGCGCCUGgg------CG- -5'
29526 3' -60.8 NC_006151.1 + 65305 0.66 0.677472
Target:  5'- cCAGGUGGCUG-AGCcCGCGG--CCGUu -3'
miRNA:   3'- -GUCCGUCGACuUCGcGCGCCugGGCG- -5'
29526 3' -60.8 NC_006151.1 + 123869 0.66 0.677472
Target:  5'- cUAGcGCuGCUGcugcuGGCGCucgccGCGGcCCCGCc -3'
miRNA:   3'- -GUC-CGuCGACu----UCGCG-----CGCCuGGGCG- -5'
29526 3' -60.8 NC_006151.1 + 137918 0.66 0.677472
Target:  5'- -cGGCGGCUGccacGGGCGCcugcuccccuuuGgGGACgCGCc -3'
miRNA:   3'- guCCGUCGAC----UUCGCG------------CgCCUGgGCG- -5'
29526 3' -60.8 NC_006151.1 + 81494 0.66 0.677472
Target:  5'- cCAcGCGGCcGucGGCGagaGCGcGGCCCGCg -3'
miRNA:   3'- -GUcCGUCGaCu-UCGCg--CGC-CUGGGCG- -5'
29526 3' -60.8 NC_006151.1 + 84636 0.66 0.677472
Target:  5'- -cGGC-GCUGGacaacgccauGGC-CGCGGGCgCGCg -3'
miRNA:   3'- guCCGuCGACU----------UCGcGCGCCUGgGCG- -5'
29526 3' -60.8 NC_006151.1 + 54644 0.66 0.677472
Target:  5'- -cGGCGGCgcGAGcGCuGCGUGGACgaGCa -3'
miRNA:   3'- guCCGUCGa-CUU-CG-CGCGCCUGggCG- -5'
29526 3' -60.8 NC_006151.1 + 102322 0.66 0.676481
Target:  5'- aCAuGguGCUGAcggaGGCGCGCGcgcugcuggacguGGCCgGCg -3'
miRNA:   3'- -GUcCguCGACU----UCGCGCGC-------------CUGGgCG- -5'
29526 3' -60.8 NC_006151.1 + 133970 0.66 0.674497
Target:  5'- -cGGCAGCggccccucggugGAgacgauggaagagAGCGCGgGGGCCaccaGCg -3'
miRNA:   3'- guCCGUCGa-----------CU-------------UCGCGCgCCUGGg---CG- -5'
29526 3' -60.8 NC_006151.1 + 132366 0.66 0.674497
Target:  5'- cCAGGgGGCc-AGGCGCGCGacgucgcgguaguaGcGCCCGCg -3'
miRNA:   3'- -GUCCgUCGacUUCGCGCGC--------------C-UGGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.