Results 41 - 45 of 45 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 29526 | 5' | -60 | NC_006151.1 | + | 39751 | 0.66 | 0.677787 |
|
Target: 5'- -cGGGGACCCGGacuuugacgCGGGC---GCCGCc -3' miRNA: 3'- uuCUCCUGGGUCa--------GCCCGaacCGGUG- -5' |
|||||||
| 29526 | 5' | -60 | NC_006151.1 | + | 75420 | 0.66 | 0.688873 |
|
Target: 5'- cGGGAGG-CCCGGcgUGGGCgcgaagcugccggcgUGGCgCGCg -3' miRNA: 3'- -UUCUCCuGGGUCa-GCCCGa--------------ACCG-GUG- -5' |
|||||||
| 29526 | 5' | -60 | NC_006151.1 | + | 133146 | 0.66 | 0.707883 |
|
Target: 5'- cAGAgGGACUCGGcggcggcgCGGGCgugggccucGGCCACg -3' miRNA: 3'- uUCU-CCUGGGUCa-------GCCCGaa-------CCGGUG- -5' |
|||||||
| 29526 | 5' | -60 | NC_006151.1 | + | 6113 | 0.66 | 0.707883 |
|
Target: 5'- aAGGAGGACggggCGGccUCGuGGCUccGGCCGCg -3' miRNA: 3'- -UUCUCCUGg---GUC--AGC-CCGAa-CCGGUG- -5' |
|||||||
| 29526 | 5' | -60 | NC_006151.1 | + | 77238 | 0.66 | 0.707883 |
|
Target: 5'- cGGGAGGcgcccCCCGG-CGGGUUuaaaggagUGGUCGCg -3' miRNA: 3'- -UUCUCCu----GGGUCaGCCCGA--------ACCGGUG- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home