miRNA: 3'- -UUCUCCUGGGUca--GCCCGAA------CCGGUG- -5'
miRNA: 3'- uUCUCCU---GGGUCAGCCCgAaCCGGUg -5'
miRNA: 3'- uUCUCCUGGGUCaGC-CCGaa----CCGGUG- -5'
miRNA: 3'- -UUCUCCUGGGUCAGCC---CGaa-CCGGUg -5'
miRNA: 3'- uuCUCCUGGGUCaGCCCGAaCCGGUG- -5'
Results 41 - 45 of 45 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 29526 | 5' | -60 | NC_006151.1 | + | 112574 | 0.73 | 0.305161 |
|
Target: 5'- gAGGAGGACUCGcccgCGGGCUUcguggaGGCCGCc -3' miRNA: 3'- -UUCUCCUGGGUca--GCCCGAA------CCGGUG- -5' |
|||||||
| 29526 | 5' | -60 | NC_006151.1 | + | 14252 | 0.74 | 0.265353 |
|
Target: 5'- cGGGGGAuccCCCGGUCGGGgUgGGCCGg -3' miRNA: 3'- uUCUCCU---GGGUCAGCCCgAaCCGGUg -5' |
|||||||
| 29526 | 5' | -60 | NC_006151.1 | + | 131108 | 0.76 | 0.203416 |
|
Target: 5'- cGGGGGGCCCGGcCGcGGCgcgggaGGCCGCg -3' miRNA: 3'- uUCUCCUGGGUCaGC-CCGaa----CCGGUG- -5' |
|||||||
| 29526 | 5' | -60 | NC_006151.1 | + | 36494 | 0.77 | 0.170858 |
|
Target: 5'- aGGGGGGACCCGGUCGGugaGCccgGGCCGg -3' miRNA: 3'- -UUCUCCUGGGUCAGCC---CGaa-CCGGUg -5' |
|||||||
| 29526 | 5' | -60 | NC_006151.1 | + | 55065 | 0.87 | 0.03312 |
|
Target: 5'- -cGAGGACCCGG-CGGGCUcGGCCGCg -3' miRNA: 3'- uuCUCCUGGGUCaGCCCGAaCCGGUG- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home