miRNA display CGI


Results 1 - 20 of 188 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29527 3' -49.7 NC_006151.1 + 84426 0.65 0.996951
Target:  5'- aGGCGGCGcGCGGcggcgc-GCgGCCCa -3'
miRNA:   3'- gUCGCCGCaCGUUauuuuaaCG-CGGG- -5'
29527 3' -49.7 NC_006151.1 + 10290 0.65 0.996846
Target:  5'- aGGCGGCGgGCAcguccc--GCGUCCc -3'
miRNA:   3'- gUCGCCGCaCGUuauuuuaaCGCGGG- -5'
29527 3' -49.7 NC_006151.1 + 53381 0.66 0.996682
Target:  5'- -cGCGGCGUugaucagccaccaGCAGUAGAcgacggccgugagcaGgUGCcGCCCg -3'
miRNA:   3'- guCGCCGCA-------------CGUUAUUU---------------UaACG-CGGG- -5'
29527 3' -49.7 NC_006151.1 + 20152 0.66 0.996682
Target:  5'- gGGCGGCGcGUGGaccgccgggccGCGCCCg -3'
miRNA:   3'- gUCGCCGCaCGUUauuuuaa----CGCGGG- -5'
29527 3' -49.7 NC_006151.1 + 112056 0.66 0.996511
Target:  5'- gGGCGGCG-GCGGUGGuggUGgGgCUg -3'
miRNA:   3'- gUCGCCGCaCGUUAUUuuaACgCgGG- -5'
29527 3' -49.7 NC_006151.1 + 11807 0.66 0.996511
Target:  5'- gGGCGGgGUGgGGUGGGGggcgGCggcggcucGCCCu -3'
miRNA:   3'- gUCGCCgCACgUUAUUUUaa--CG--------CGGG- -5'
29527 3' -49.7 NC_006151.1 + 95935 0.66 0.996453
Target:  5'- gAG-GGCGUGCGGUuGAAgcucUGCagcgagaGCCCg -3'
miRNA:   3'- gUCgCCGCACGUUAuUUUa---ACG-------CGGG- -5'
29527 3' -49.7 NC_006151.1 + 36521 0.66 0.996211
Target:  5'- cCGGCGGCGcgGCcucggaccccgGCGCCa -3'
miRNA:   3'- -GUCGCCGCa-CGuuauuuuaa--CGCGGg -5'
29527 3' -49.7 NC_006151.1 + 21612 0.66 0.99589
Target:  5'- gCGGCGGCGUaggcccGCGGga-----GCGUCCg -3'
miRNA:   3'- -GUCGCCGCA------CGUUauuuuaaCGCGGG- -5'
29527 3' -49.7 NC_006151.1 + 49841 0.66 0.99589
Target:  5'- aCGGCGGCG-GCGGgccc---GCGCUg -3'
miRNA:   3'- -GUCGCCGCaCGUUauuuuaaCGCGGg -5'
29527 3' -49.7 NC_006151.1 + 70097 0.66 0.99589
Target:  5'- gGGCGGCGaagggcGCGAgcGGGUccaCGCCCg -3'
miRNA:   3'- gUCGCCGCa-----CGUUauUUUAac-GCGGG- -5'
29527 3' -49.7 NC_006151.1 + 88087 0.66 0.99589
Target:  5'- aGGCGGCagGUGUAGUcGAc--GgGCCCg -3'
miRNA:   3'- gUCGCCG--CACGUUAuUUuaaCgCGGG- -5'
29527 3' -49.7 NC_006151.1 + 99058 0.66 0.99589
Target:  5'- -cGCGuaCGUGCGcgAGc--UGCGCCCg -3'
miRNA:   3'- guCGCc-GCACGUuaUUuuaACGCGGG- -5'
29527 3' -49.7 NC_006151.1 + 127691 0.66 0.99589
Target:  5'- uCGGCGGCGcucuccUGCGacgagcucGUGGAGgccccgGCGUCCc -3'
miRNA:   3'- -GUCGCCGC------ACGU--------UAUUUUaa----CGCGGG- -5'
29527 3' -49.7 NC_006151.1 + 65371 0.66 0.99589
Target:  5'- cCAG-GGCGUGCAccac----GUGCCCc -3'
miRNA:   3'- -GUCgCCGCACGUuauuuuaaCGCGGG- -5'
29527 3' -49.7 NC_006151.1 + 128617 0.66 0.99589
Target:  5'- -cGCGGCGUGCGccccAGGUgGCGgaCCa -3'
miRNA:   3'- guCGCCGCACGUuau-UUUAaCGCg-GG- -5'
29527 3' -49.7 NC_006151.1 + 72061 0.66 0.995687
Target:  5'- uCGGCGGCGcGCGccaccacccGCGCCg -3'
miRNA:   3'- -GUCGCCGCaCGUuauuuuaa-CGCGGg -5'
29527 3' -49.7 NC_006151.1 + 70919 0.66 0.995547
Target:  5'- uGGCGcGCGUGCuggcgcugcacgacgGCGCCUu -3'
miRNA:   3'- gUCGC-CGCACGuuauuuuaa------CGCGGG- -5'
29527 3' -49.7 NC_006151.1 + 100902 0.66 0.995181
Target:  5'- -cGCGGCGcGCGc-------GCGCCCg -3'
miRNA:   3'- guCGCCGCaCGUuauuuuaaCGCGGG- -5'
29527 3' -49.7 NC_006151.1 + 77110 0.66 0.995181
Target:  5'- -cGCGGCGgGCGc-------GCGCCCa -3'
miRNA:   3'- guCGCCGCaCGUuauuuuaaCGCGGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.