miRNA display CGI


Results 1 - 20 of 188 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29527 3' -49.7 NC_006151.1 + 2296 0.72 0.897186
Target:  5'- -cGCGGCG-GCGAcg-----GCGCCCg -3'
miRNA:   3'- guCGCCGCaCGUUauuuuaaCGCGGG- -5'
29527 3' -49.7 NC_006151.1 + 2473 0.73 0.875421
Target:  5'- cCAGCGGUuggccgcgcgGUGCccgAAGGcgGCGCCCg -3'
miRNA:   3'- -GUCGCCG----------CACGuuaUUUUaaCGCGGG- -5'
29527 3' -49.7 NC_006151.1 + 3013 0.68 0.987003
Target:  5'- aGGCGGC---CGAUGucGggGCGCCCg -3'
miRNA:   3'- gUCGCCGcacGUUAUuuUaaCGCGGG- -5'
29527 3' -49.7 NC_006151.1 + 3269 0.71 0.916636
Target:  5'- -cGCGGCGcgcgGCGAUG----UGCGCCa -3'
miRNA:   3'- guCGCCGCa---CGUUAUuuuaACGCGGg -5'
29527 3' -49.7 NC_006151.1 + 3459 0.66 0.994376
Target:  5'- -cGCGGgGUGCuc-GGGcaUGgGCCCg -3'
miRNA:   3'- guCGCCgCACGuuaUUUuaACgCGGG- -5'
29527 3' -49.7 NC_006151.1 + 4484 0.68 0.987003
Target:  5'- gUAGCGGCG-GCucAUGGccacgGCGCUCa -3'
miRNA:   3'- -GUCGCCGCaCGu-UAUUuuaa-CGCGGG- -5'
29527 3' -49.7 NC_006151.1 + 5112 0.7 0.960717
Target:  5'- aCGGUGGCGgcccggcGCGGgcGAGUgggGCGCCg -3'
miRNA:   3'- -GUCGCCGCa------CGUUauUUUAa--CGCGGg -5'
29527 3' -49.7 NC_006151.1 + 5657 0.69 0.964333
Target:  5'- cCGGCGGCGggggagGCuggGGAAgcGgGCCCc -3'
miRNA:   3'- -GUCGCCGCa-----CGuuaUUUUaaCgCGGG- -5'
29527 3' -49.7 NC_006151.1 + 6172 0.7 0.948374
Target:  5'- uCGGCGGCGUcGUcggAGAAgagGCcGCCCg -3'
miRNA:   3'- -GUCGCCGCA-CGuuaUUUUaa-CG-CGGG- -5'
29527 3' -49.7 NC_006151.1 + 7125 0.66 0.994376
Target:  5'- -cGCGGCGcGcCAAUGAGAUUGU-CCg -3'
miRNA:   3'- guCGCCGCaC-GUUAUUUUAACGcGGg -5'
29527 3' -49.7 NC_006151.1 + 8149 0.71 0.922591
Target:  5'- gGGCGG-GUGCAAaGGGGcgGgGCCCa -3'
miRNA:   3'- gUCGCCgCACGUUaUUUUaaCgCGGG- -5'
29527 3' -49.7 NC_006151.1 + 8327 0.66 0.994376
Target:  5'- -cGgGGCGcGCGGgccucGAUcGCGCCCg -3'
miRNA:   3'- guCgCCGCaCGUUauu--UUAaCGCGGG- -5'
29527 3' -49.7 NC_006151.1 + 8549 0.67 0.990008
Target:  5'- gGGgGGUGUGCGAgagaGAGcgUGCGUg- -3'
miRNA:   3'- gUCgCCGCACGUUa---UUUuaACGCGgg -5'
29527 3' -49.7 NC_006151.1 + 9623 0.7 0.952743
Target:  5'- cCGGCGGCGaggggggaaGCGGgaggGAGAggcgcgGCGCCCc -3'
miRNA:   3'- -GUCGCCGCa--------CGUUa---UUUUaa----CGCGGG- -5'
29527 3' -49.7 NC_006151.1 + 10014 0.67 0.991291
Target:  5'- gCGGCGGCG-GCGGUcgcc--GCGgCCa -3'
miRNA:   3'- -GUCGCCGCaCGUUAuuuuaaCGCgGG- -5'
29527 3' -49.7 NC_006151.1 + 10100 0.7 0.960717
Target:  5'- aGGCGG-GUGCGGaGGAGgaaGCGCUCg -3'
miRNA:   3'- gUCGCCgCACGUUaUUUUaa-CGCGGG- -5'
29527 3' -49.7 NC_006151.1 + 10290 0.65 0.996846
Target:  5'- aGGCGGCGgGCAcguccc--GCGUCCc -3'
miRNA:   3'- gUCGCCGCaCGUuauuuuaaCGCGGG- -5'
29527 3' -49.7 NC_006151.1 + 10468 0.73 0.851477
Target:  5'- -cGCGGCG-GCGGUGAAGgaggagaGCcGCCCg -3'
miRNA:   3'- guCGCCGCaCGUUAUUUUaa-----CG-CGGG- -5'
29527 3' -49.7 NC_006151.1 + 10663 0.67 0.988582
Target:  5'- aGGCGGCGggggaGCGcgGAGc--GCGCCg -3'
miRNA:   3'- gUCGCCGCa----CGUuaUUUuaaCGCGGg -5'
29527 3' -49.7 NC_006151.1 + 11807 0.66 0.996511
Target:  5'- gGGCGGgGUGgGGUGGGGggcgGCggcggcucGCCCu -3'
miRNA:   3'- gUCGCCgCACgUUAUUUUaa--CG--------CGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.