miRNA display CGI


Results 1 - 20 of 128 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29527 5' -57.1 NC_006151.1 + 118887 0.66 0.874127
Target:  5'- gCGGcGGCgacGCGGcCGCCgGCgGCCUCGa -3'
miRNA:   3'- -GCC-CCGa--UGUUaGCGGaCG-UGGAGCg -5'
29527 5' -57.1 NC_006151.1 + 104438 0.66 0.874127
Target:  5'- uGGGGCgcuucagcuacUACGA-CGCCgUGgGCUUCGUc -3'
miRNA:   3'- gCCCCG-----------AUGUUaGCGG-ACgUGGAGCG- -5'
29527 5' -57.1 NC_006151.1 + 66866 0.66 0.874127
Target:  5'- cCGGGGCggcGCGAagggcgCGCCcgGC-CC-CGCg -3'
miRNA:   3'- -GCCCCGa--UGUUa-----GCGGa-CGuGGaGCG- -5'
29527 5' -57.1 NC_006151.1 + 23252 0.66 0.874127
Target:  5'- gGGGGCcucggggGC-AUCGCCgugGacgACCUCGUc -3'
miRNA:   3'- gCCCCGa------UGuUAGCGGa--Cg--UGGAGCG- -5'
29527 5' -57.1 NC_006151.1 + 105693 0.66 0.874127
Target:  5'- gCGGGGCcgACgccggcgcggccGcgCGCCUcgacgGCGCCgugCGCg -3'
miRNA:   3'- -GCCCCGa-UG------------UuaGCGGA-----CGUGGa--GCG- -5'
29527 5' -57.1 NC_006151.1 + 97473 0.66 0.873403
Target:  5'- aGGcGGCUcaccgccACGuggacgCGCa-GCGCCUCGCg -3'
miRNA:   3'- gCC-CCGA-------UGUua----GCGgaCGUGGAGCG- -5'
29527 5' -57.1 NC_006151.1 + 737 0.66 0.866794
Target:  5'- gGGGGCUuccgcuccgcgGCGccCGCCccauugGCuccCCUCGCg -3'
miRNA:   3'- gCCCCGA-----------UGUuaGCGGa-----CGu--GGAGCG- -5'
29527 5' -57.1 NC_006151.1 + 32147 0.66 0.866794
Target:  5'- aGGGGC-GCGAgCGCUUccuccuccGCACC-CGCc -3'
miRNA:   3'- gCCCCGaUGUUaGCGGA--------CGUGGaGCG- -5'
29527 5' -57.1 NC_006151.1 + 68264 0.66 0.866794
Target:  5'- gCGcGGCgACGGUCGCg-GCGCCgggCGCc -3'
miRNA:   3'- -GCcCCGaUGUUAGCGgaCGUGGa--GCG- -5'
29527 5' -57.1 NC_006151.1 + 69147 0.66 0.866794
Target:  5'- gCGGGuGCU-CGA-CGCCgUGC-CgCUCGCa -3'
miRNA:   3'- -GCCC-CGAuGUUaGCGG-ACGuG-GAGCG- -5'
29527 5' -57.1 NC_006151.1 + 74187 0.66 0.866794
Target:  5'- -cGGGCaccACcAUCGUCUGCACCa-GCu -3'
miRNA:   3'- gcCCCGa--UGuUAGCGGACGUGGagCG- -5'
29527 5' -57.1 NC_006151.1 + 127412 0.66 0.866794
Target:  5'- aCGGGaGCccGCGggGUCGCCUcgGCGCUcgugCGCg -3'
miRNA:   3'- -GCCC-CGa-UGU--UAGCGGA--CGUGGa---GCG- -5'
29527 5' -57.1 NC_006151.1 + 78073 0.66 0.866049
Target:  5'- gCGGGaGCcugucccUGCAGaUGCuCUGCgACCUCGUg -3'
miRNA:   3'- -GCCC-CG-------AUGUUaGCG-GACG-UGGAGCG- -5'
29527 5' -57.1 NC_006151.1 + 57517 0.66 0.862294
Target:  5'- gCGGcGGCgGCGGcCGCCUccggcgcggccgcggGCACgUCGCc -3'
miRNA:   3'- -GCC-CCGaUGUUaGCGGA---------------CGUGgAGCG- -5'
29527 5' -57.1 NC_006151.1 + 20126 0.66 0.859253
Target:  5'- aCGGGGCUgggggGCGggCGCCgcggGgGCggCGCg -3'
miRNA:   3'- -GCCCCGA-----UGUuaGCGGa---CgUGgaGCG- -5'
29527 5' -57.1 NC_006151.1 + 45281 0.66 0.859253
Target:  5'- uCGGGGUgagcgGCGGUCGUCccgaGgACC-CGCg -3'
miRNA:   3'- -GCCCCGa----UGUUAGCGGa---CgUGGaGCG- -5'
29527 5' -57.1 NC_006151.1 + 69762 0.66 0.859253
Target:  5'- cCGGGGC--CAcgCGCC-GCGCg-CGCg -3'
miRNA:   3'- -GCCCCGauGUuaGCGGaCGUGgaGCG- -5'
29527 5' -57.1 NC_006151.1 + 91563 0.66 0.859253
Target:  5'- gCGGGGCgauggcgGCGcgCGCgUGCuCCaggugcucgUCGCu -3'
miRNA:   3'- -GCCCCGa------UGUuaGCGgACGuGG---------AGCG- -5'
29527 5' -57.1 NC_006151.1 + 114061 0.66 0.859253
Target:  5'- gCGGuGGCcgACAAcUGCCUGuCGCuCUCGg -3'
miRNA:   3'- -GCC-CCGa-UGUUaGCGGAC-GUG-GAGCg -5'
29527 5' -57.1 NC_006151.1 + 111412 0.66 0.859253
Target:  5'- cCGGGGCgggagACcgagCGCUgccGCAUCUCGg -3'
miRNA:   3'- -GCCCCGa----UGuua-GCGGa--CGUGGAGCg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.